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ATP5I (ATP synthase, H+ transporting, mitochondrial Fo complex subunit E)

Identity

Alias_namesATP synthase, H transporting, mitochondrial F0 complex, subunit e
ATP synthase, H transporting, mitochondrial F0 complex, subunit E
ATP synthase, H transporting, mitochondrial Fo complex, subunit E
Other aliasATP5K
HGNC (Hugo) ATP5I
LocusID (NCBI) 521
Atlas_Id 54141
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 672436 and ends at 674338 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP5I (4p16.3) / ABCA11P (4p16.3)ATP5I (4p16.3) / AXDND1 (1q25.2)ATP5I (4p16.3) / MALAT1 (11q13.1)
ATP5I (4p16.3) / MFSD7 (4p16.3)ATP5I (4p16.3) / OS9 (12q13.3)MFSD7 (4p16.3) / ATP5I (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5I   846
Cards
Entrez_Gene (NCBI)ATP5I  521  ATP synthase, H+ transporting, mitochondrial Fo complex subunit E
AliasesATP5K
GeneCards (Weizmann)ATP5I
Ensembl hg19 (Hinxton)ENSG00000169020 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169020 [Gene_View]  chr4:672436-674338 [Contig_View]  ATP5I [Vega]
ICGC DataPortalENSG00000169020
TCGA cBioPortalATP5I
AceView (NCBI)ATP5I
Genatlas (Paris)ATP5I
WikiGenes521
SOURCE (Princeton)ATP5I
Genetics Home Reference (NIH)ATP5I
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5I  -     chr4:672436-674338 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5I  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblATP5I - 4p16.3 [CytoView hg19]  ATP5I - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIATP5I [Mapview hg19]  ATP5I [Mapview hg38]
OMIM601519   
Gene and transcription
Genbank (Entrez)AB028624 AK000656 BC003679 BC017215 BC105610
RefSeq transcript (Entrez)NM_007100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5I
Cluster EST : UnigeneHs.85539 [ NCBI ]
CGAP (NCI)Hs.85539
Alternative Splicing GalleryENSG00000169020
Gene ExpressionATP5I [ NCBI-GEO ]   ATP5I [ EBI - ARRAY_EXPRESS ]   ATP5I [ SEEK ]   ATP5I [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5I [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)521
GTEX Portal (Tissue expression)ATP5I
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56385   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56385  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56385
Splice isoforms : SwissVarP56385
PhosPhoSitePlusP56385
Domains : Interpro (EBI)ATP_synth_F0_esu_mt   
Domain families : Pfam (Sanger)ATP-synt_E (PF05680)   
Domain families : Pfam (NCBI)pfam05680   
Conserved Domain (NCBI)ATP5I
DMDM Disease mutations521
Blocks (Seattle)ATP5I
SuperfamilyP56385
Human Protein AtlasENSG00000169020
Peptide AtlasP56385
HPRD03308
IPIIPI00815717   IPI00218848   
Protein Interaction databases
DIP (DOE-UCLA)P56385
IntAct (EBI)P56385
FunCoupENSG00000169020
BioGRIDATP5I
STRING (EMBL)ATP5I
ZODIACATP5I
Ontologies - Pathways
QuickGOP56385
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  hydrogen ion transmembrane transporter activity  ATPase activity  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  hydrogen ion transmembrane transporter activity  ATPase activity  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  
Pathways : KEGGOxidative phosphorylation   
NDEx NetworkATP5I
Atlas of Cancer Signalling NetworkATP5I
Wikipedia pathwaysATP5I
Orthology - Evolution
OrthoDB521
GeneTree (enSembl)ENSG00000169020
Phylogenetic Trees/Animal Genes : TreeFamATP5I
HOVERGENP56385
HOGENOMP56385
Homologs : HomoloGeneATP5I
Homology/Alignments : Family Browser (UCSC)ATP5I
Gene fusions - Rearrangements
Fusion : MitelmanATP5I/MFSD7 [4p16.3/4p16.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5I [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5I
dbVarATP5I
ClinVarATP5I
1000_GenomesATP5I 
Exome Variant ServerATP5I
ExAC (Exome Aggregation Consortium)ATP5I (select the gene name)
Genetic variants : HAPMAP521
Genomic Variants (DGV)ATP5I [DGVbeta]
DECIPHERATP5I [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5I 
Mutations
ICGC Data PortalATP5I 
TCGA Data PortalATP5I 
Broad Tumor PortalATP5I
OASIS PortalATP5I [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5I  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5I
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5I
DgiDB (Drug Gene Interaction Database)ATP5I
DoCM (Curated mutations)ATP5I (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5I (select a term)
intoGenATP5I
Cancer3DATP5I(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601519   
Orphanet
MedgenATP5I
Genetic Testing Registry ATP5I
NextProtP56385 [Medical]
TSGene521
GENETestsATP5I
Target ValidationATP5I
Huge Navigator ATP5I [HugePedia]
snp3D : Map Gene to Disease521
BioCentury BCIQATP5I
ClinGenATP5I
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD521
Chemical/Pharm GKB GenePA25136
Clinical trialATP5I
Miscellaneous
canSAR (ICR)ATP5I (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5I
EVEXATP5I
GoPubMedATP5I
iHOPATP5I
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:54 CEST 2017

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