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ATP5J (ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6)

Identity

Alias_namesATP5A
ATP5
ATPM
ATP synthase, H transporting, mitochondrial F0 complex, subunit F6
ATP synthase, H transporting, mitochondrial Fo complex, subunit F6
Alias_symbol (synonym)CF6
Other aliasF6
HGNC (Hugo) ATP5J
LocusID (NCBI) 522
Atlas_Id 53986
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 25724480 and ends at 25735654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP5J (21q21.3) / APP (21q21.3)ATP5J (21q21.3) / TADA3 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5J   847
Cards
Entrez_Gene (NCBI)ATP5J  522  ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6
AliasesATP5; ATP5A; ATPM; CF6; 
F6
GeneCards (Weizmann)ATP5J
Ensembl hg19 (Hinxton)ENSG00000154723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154723 [Gene_View]  chr21:25724480-25735654 [Contig_View]  ATP5J [Vega]
ICGC DataPortalENSG00000154723
TCGA cBioPortalATP5J
AceView (NCBI)ATP5J
Genatlas (Paris)ATP5J
WikiGenes522
SOURCE (Princeton)ATP5J
Genetics Home Reference (NIH)ATP5J
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5J  -     chr21:25724480-25735654 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5J  -     21q21.3   [Description]    (hg19-Feb_2009)
EnsemblATP5J - 21q21.3 [CytoView hg19]  ATP5J - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBIATP5J [Mapview hg19]  ATP5J [Mapview hg38]
OMIM603152   
Gene and transcription
Genbank (Entrez)AA364611 AI085837 AK311899 AL110183 AY544129
RefSeq transcript (Entrez)NM_001003696 NM_001003697 NM_001003701 NM_001003703 NM_001320266 NM_001320267 NM_001685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5J
Cluster EST : UnigeneHs.246310 [ NCBI ]
CGAP (NCI)Hs.246310
Alternative Splicing GalleryENSG00000154723
Gene ExpressionATP5J [ NCBI-GEO ]   ATP5J [ EBI - ARRAY_EXPRESS ]   ATP5J [ SEEK ]   ATP5J [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)522
GTEX Portal (Tissue expression)ATP5J
Protein : pattern, domain, 3D structure
UniProt/SwissProtP18859   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP18859  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP18859
Splice isoforms : SwissVarP18859
PhosPhoSitePlusP18859
Domains : Interpro (EBI)ATP_synth_f6_mt   
Domain families : Pfam (Sanger)ATP-synt_F6 (PF05511)   
Domain families : Pfam (NCBI)pfam05511   
Conserved Domain (NCBI)ATP5J
DMDM Disease mutations522
Blocks (Seattle)ATP5J
SuperfamilyP18859
Human Protein AtlasENSG00000154723
Peptide AtlasP18859
HPRD04399
IPIIPI00002521   IPI00456008   IPI00794158   
Protein Interaction databases
DIP (DOE-UCLA)P18859
IntAct (EBI)P18859
FunCoupENSG00000154723
BioGRIDATP5J
STRING (EMBL)ATP5J
ZODIACATP5J
Ontologies - Pathways
QuickGOP18859
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  hydrogen ion transmembrane transporter activity  ATPase activity  substantia nigra development  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  hydrogen ion transmembrane transporter activity  ATPase activity  substantia nigra development  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  
Pathways : KEGGOxidative phosphorylation    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkATP5J
Atlas of Cancer Signalling NetworkATP5J
Wikipedia pathwaysATP5J
Orthology - Evolution
OrthoDB522
GeneTree (enSembl)ENSG00000154723
Phylogenetic Trees/Animal Genes : TreeFamATP5J
HOVERGENP18859
HOGENOMP18859
Homologs : HomoloGeneATP5J
Homology/Alignments : Family Browser (UCSC)ATP5J
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5J [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5J
dbVarATP5J
ClinVarATP5J
1000_GenomesATP5J 
Exome Variant ServerATP5J
ExAC (Exome Aggregation Consortium)ATP5J (select the gene name)
Genetic variants : HAPMAP522
Genomic Variants (DGV)ATP5J [DGVbeta]
DECIPHERATP5J [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5J 
Mutations
ICGC Data PortalATP5J 
TCGA Data PortalATP5J 
Broad Tumor PortalATP5J
OASIS PortalATP5J [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5J  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5J
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5J
DgiDB (Drug Gene Interaction Database)ATP5J
DoCM (Curated mutations)ATP5J (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5J (select a term)
intoGenATP5J
Cancer3DATP5J(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603152   
Orphanet
MedgenATP5J
Genetic Testing Registry ATP5J
NextProtP18859 [Medical]
TSGene522
GENETestsATP5J
Huge Navigator ATP5J [HugePedia]
snp3D : Map Gene to Disease522
BioCentury BCIQATP5J
ClinGenATP5J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD522
Chemical/Pharm GKB GenePA25137
Clinical trialATP5J
Miscellaneous
canSAR (ICR)ATP5J (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5J
EVEXATP5J
GoPubMedATP5J
iHOPATP5J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:07:10 CEST 2017

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