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ATP5J2-PTCD1 (ATP5J2-PTCD1 readthrough)

Identity

Other alias-
HGNC (Hugo) ATP5J2-PTCD1
LocusID (NCBI) 100526740
Atlas_Id 60630
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99416739 and ends at 99466201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP5J2-PTCD1 (7q22.1) / DHX33 (17p13.2)ATP5J2-PTCD1 (7q22.1) / NMT2 (10p13)ATP6V0A1 (17q21.2) / ATP5J2-PTCD1 (7q22.1)
CCND1 (11q13.3) / ATP5J2-PTCD1 (7q22.1)DLEU2 (13q14.2) / ATP5J2-PTCD1 (7q22.1)TMEM259 (19p13.3) / ATP5J2-PTCD1 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5J2-PTCD1   38844
Cards
Entrez_Gene (NCBI)ATP5J2-PTCD1  100526740  ATP5J2-PTCD1 readthrough
Aliases
GeneCards (Weizmann)ATP5J2-PTCD1
Ensembl hg19 (Hinxton)ENSG00000248919 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248919 [Gene_View]  chr7:99416739-99466201 [Contig_View]  ATP5J2-PTCD1 [Vega]
ICGC DataPortalENSG00000248919
TCGA cBioPortalATP5J2-PTCD1
AceView (NCBI)ATP5J2-PTCD1
Genatlas (Paris)ATP5J2-PTCD1
WikiGenes100526740
SOURCE (Princeton)ATP5J2-PTCD1
Genetics Home Reference (NIH)ATP5J2-PTCD1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5J2-PTCD1  -     chr7:99416739-99466201 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5J2-PTCD1  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblATP5J2-PTCD1 - 7q22.1 [CytoView hg19]  ATP5J2-PTCD1 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIATP5J2-PTCD1 [Mapview hg19]  ATP5J2-PTCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295912
RefSeq transcript (Entrez)NM_001198879
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5J2-PTCD1
Cluster EST : UnigeneHs.632313 [ NCBI ]
CGAP (NCI)Hs.632313
Alternative Splicing GalleryENSG00000248919
Gene ExpressionATP5J2-PTCD1 [ NCBI-GEO ]   ATP5J2-PTCD1 [ EBI - ARRAY_EXPRESS ]   ATP5J2-PTCD1 [ SEEK ]   ATP5J2-PTCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5J2-PTCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526740
GTEX Portal (Tissue expression)ATP5J2-PTCD1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP5J2-PTCD1
DMDM Disease mutations100526740
Blocks (Seattle)ATP5J2-PTCD1
Human Protein AtlasENSG00000248919
Protein Interaction databases
FunCoupENSG00000248919
BioGRIDATP5J2-PTCD1
STRING (EMBL)ATP5J2-PTCD1
ZODIACATP5J2-PTCD1
Ontologies - Pathways
Huge Navigator ATP5J2-PTCD1 [HugePedia]
snp3D : Map Gene to Disease100526740
BioCentury BCIQATP5J2-PTCD1
ClinGenATP5J2-PTCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526740
Clinical trialATP5J2-PTCD1
Miscellaneous
canSAR (ICR)ATP5J2-PTCD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5J2-PTCD1
EVEXATP5J2-PTCD1
GoPubMedATP5J2-PTCD1
iHOPATP5J2-PTCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:12 CEST 2017

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