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ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2)

Identity

Alias_namesATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2
Alias_symbol (synonym)F1Fo-ATPase
ATP5JL
Other alias
HGNC (Hugo) ATP5J2
LocusID (NCBI) 9551
Atlas_Id 60629
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99458161 and ends at 99466201 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5J2   848
Cards
Entrez_Gene (NCBI)ATP5J2  9551  ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2
AliasesATP5JL
GeneCards (Weizmann)ATP5J2
Ensembl hg19 (Hinxton)ENSG00000241468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241468 [Gene_View]  chr7:99458161-99466201 [Contig_View]  ATP5J2 [Vega]
ICGC DataPortalENSG00000241468
TCGA cBioPortalATP5J2
AceView (NCBI)ATP5J2
Genatlas (Paris)ATP5J2
WikiGenes9551
SOURCE (Princeton)ATP5J2
Genetics Home Reference (NIH)ATP5J2
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5J2  -     chr7:99458161-99466201 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5J2  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblATP5J2 - 7q22.1 [CytoView hg19]  ATP5J2 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIATP5J2 [Mapview hg19]  ATP5J2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF047436 AF088918 AK094388 AK123419 AK223348
RefSeq transcript (Entrez)NM_001003713 NM_001003714 NM_001039178 NM_001190353 NM_001190354 NM_004889
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5J2
Cluster EST : UnigeneHs.656515 [ NCBI ]
CGAP (NCI)Hs.656515
Alternative Splicing GalleryENSG00000241468
Gene ExpressionATP5J2 [ NCBI-GEO ]   ATP5J2 [ EBI - ARRAY_EXPRESS ]   ATP5J2 [ SEEK ]   ATP5J2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5J2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9551
GTEX Portal (Tissue expression)ATP5J2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56134   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56134  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56134
Splice isoforms : SwissVarP56134
PhosPhoSitePlusP56134
Domains : Interpro (EBI)F1F0-ATPsyn_F_prd   
Domain families : Pfam (Sanger)WRW (PF10206)   
Domain families : Pfam (NCBI)pfam10206   
Conserved Domain (NCBI)ATP5J2
DMDM Disease mutations9551
Blocks (Seattle)ATP5J2
SuperfamilyP56134
Human Protein AtlasENSG00000241468
Peptide AtlasP56134
HPRD16520
IPIIPI00220300   IPI01013118   IPI01010811   IPI00219291   IPI00719814   IPI00456013   IPI00973869   
Protein Interaction databases
DIP (DOE-UCLA)P56134
IntAct (EBI)P56134
FunCoupENSG00000241468
BioGRIDATP5J2
STRING (EMBL)ATP5J2
ZODIACATP5J2
Ontologies - Pathways
QuickGOP56134
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  nucleus  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  proton transport  integral component of membrane  ATPase activity  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  extracellular exosome  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  nucleus  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  proton transport  integral component of membrane  ATPase activity  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  extracellular exosome  
Pathways : KEGGOxidative phosphorylation   
NDEx NetworkATP5J2
Atlas of Cancer Signalling NetworkATP5J2
Wikipedia pathwaysATP5J2
Orthology - Evolution
OrthoDB9551
GeneTree (enSembl)ENSG00000241468
Phylogenetic Trees/Animal Genes : TreeFamATP5J2
HOVERGENP56134
HOGENOMP56134
Homologs : HomoloGeneATP5J2
Homology/Alignments : Family Browser (UCSC)ATP5J2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5J2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5J2
dbVarATP5J2
ClinVarATP5J2
1000_GenomesATP5J2 
Exome Variant ServerATP5J2
ExAC (Exome Aggregation Consortium)ATP5J2 (select the gene name)
Genetic variants : HAPMAP9551
Genomic Variants (DGV)ATP5J2 [DGVbeta]
DECIPHERATP5J2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5J2 
Mutations
ICGC Data PortalATP5J2 
TCGA Data PortalATP5J2 
Broad Tumor PortalATP5J2
OASIS PortalATP5J2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5J2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5J2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5J2
DgiDB (Drug Gene Interaction Database)ATP5J2
DoCM (Curated mutations)ATP5J2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5J2 (select a term)
intoGenATP5J2
Cancer3DATP5J2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP5J2
Genetic Testing Registry ATP5J2
NextProtP56134 [Medical]
TSGene9551
GENETestsATP5J2
Target ValidationATP5J2
Huge Navigator ATP5J2 [HugePedia]
snp3D : Map Gene to Disease9551
BioCentury BCIQATP5J2
ClinGenATP5J2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9551
Chemical/Pharm GKB GenePA25138
Clinical trialATP5J2
Miscellaneous
canSAR (ICR)ATP5J2 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5J2
EVEXATP5J2
GoPubMedATP5J2
iHOPATP5J2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:12 CEST 2017

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