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ATP5ME (ATP synthase membrane subunit e)

Identity

Other aliasATP5I
ATP5K
HGNC (Hugo) ATP5ME
LocusID (NCBI) 521
Atlas_Id 57377
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 672436 and ends at 674338 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATP5ME   846
Cards
Entrez_Gene (NCBI)ATP5ME  521  ATP synthase membrane subunit e
AliasesATP5I; ATP5K
GeneCards (Weizmann)ATP5ME
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr4:672436-674338 [Contig_View]  ATP5ME [Vega]
TCGA cBioPortalATP5ME
AceView (NCBI)ATP5ME
Genatlas (Paris)ATP5ME
WikiGenes521
SOURCE (Princeton)ATP5ME
Genetics Home Reference (NIH)ATP5ME
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5ME  -     chr4:672436-674338 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5ME  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblATP5ME - 4p16.3 [CytoView hg19]  ATP5ME - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIATP5ME [Mapview hg19]  ATP5ME [Mapview hg38]
OMIM601519   
Gene and transcription
Genbank (Entrez)AB028624 AK000656 BC003679 BC017215 BC105610
RefSeq transcript (Entrez)NM_007100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5ME
Cluster EST : UnigeneHs.85539 [ NCBI ]
CGAP (NCI)Hs.85539
Gene ExpressionATP5ME [ NCBI-GEO ]   ATP5ME [ EBI - ARRAY_EXPRESS ]   ATP5ME [ SEEK ]   ATP5ME [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5ME [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)521
GTEX Portal (Tissue expression)ATP5ME
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56385   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56385  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56385
Splice isoforms : SwissVarP56385
PhosPhoSitePlusP56385
Domains : Interpro (EBI)ATP_synth_F0_esu_mt   
Domain families : Pfam (Sanger)ATP-synt_E (PF05680)   
Domain families : Pfam (NCBI)pfam05680   
Conserved Domain (NCBI)ATP5ME
DMDM Disease mutations521
Blocks (Seattle)ATP5ME
SuperfamilyP56385
Peptide AtlasP56385
IPIIPI00815717   IPI00218848   
Protein Interaction databases
DIP (DOE-UCLA)P56385
IntAct (EBI)P56385
BioGRIDATP5ME
STRING (EMBL)ATP5ME
ZODIACATP5ME
Ontologies - Pathways
QuickGOP56385
Ontology : AmiGO###############################################################################################################################################################################################################################################################                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                      
NDEx NetworkATP5ME
Atlas of Cancer Signalling NetworkATP5ME
Wikipedia pathwaysATP5ME
Orthology - Evolution
OrthoDB521
Phylogenetic Trees/Animal Genes : TreeFamATP5ME
HOVERGENP56385
HOGENOMP56385
Homologs : HomoloGeneATP5ME
Homology/Alignments : Family Browser (UCSC)ATP5ME
Gene fusions - Rearrangements
Fusion : QuiverATP5ME
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5ME [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5ME
dbVarATP5ME
ClinVarATP5ME
1000_GenomesATP5ME 
Exome Variant ServerATP5ME
Genetic variants : HAPMAP521
Genomic Variants (DGV)ATP5ME [DGVbeta]
DECIPHERATP5ME [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5ME 
Mutations
ICGC Data PortalATP5ME 
TCGA Data PortalATP5ME 
Broad Tumor PortalATP5ME
OASIS PortalATP5ME [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP5ME
BioMutasearch ATP5ME
DgiDB (Drug Gene Interaction Database)ATP5ME
DoCM (Curated mutations)ATP5ME (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5ME (select a term)
intoGenATP5ME
Cancer3DATP5ME(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601519   
Orphanet
DisGeNETATP5ME
MedgenATP5ME
Genetic Testing Registry ATP5ME
NextProtP56385 [Medical]
TSGene521
GENETestsATP5ME
Target ValidationATP5ME
Huge Navigator ATP5ME [HugePedia]
snp3D : Map Gene to Disease521
BioCentury BCIQATP5ME
ClinGenATP5ME
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD521
Chemical/Pharm GKB GenePA25136
Clinical trialATP5ME
Miscellaneous
canSAR (ICR)ATP5ME (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5ME
EVEXATP5ME
GoPubMedATP5ME
iHOPATP5ME
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:15:30 CEST 2018

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