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ATP5MF (ATP synthase membrane subunit f)

Identity

Other aliasATP5J2
ATP5JL
HGNC (Hugo) ATP5MF
LocusID (NCBI) 9551
Atlas_Id 80328
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99458161 and ends at 99466201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATP5MF   848
Cards
Entrez_Gene (NCBI)ATP5MF  9551  ATP synthase membrane subunit f
AliasesATP5J2; ATP5JL
GeneCards (Weizmann)ATP5MF
Ensembl hg19 (Hinxton)ENSG00000241468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241468 [Gene_View]  ENSG00000241468 [Sequence]  chr7:99458161-99466201 [Contig_View]  ATP5MF [Vega]
ICGC DataPortalENSG00000241468
TCGA cBioPortalATP5MF
AceView (NCBI)ATP5MF
Genatlas (Paris)ATP5MF
WikiGenes9551
SOURCE (Princeton)ATP5MF
Genetics Home Reference (NIH)ATP5MF
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5MF  -     chr7:99458161-99466201 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5MF  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathATP5MF - 7q22.1 [CytoView hg19]  ATP5MF - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000241468
Mapping of homologs : NCBIATP5MF [Mapview hg19]  ATP5MF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF047436 AF088918 AK094388 AK123419 AK223348
RefSeq transcript (Entrez)NM_001003713 NM_001003714 NM_001039178 NM_001190353 NM_001190354 NM_004889
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5MF
Alternative Splicing GalleryENSG00000241468
Gene ExpressionATP5MF [ NCBI-GEO ]   ATP5MF [ EBI - ARRAY_EXPRESS ]   ATP5MF [ SEEK ]   ATP5MF [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5MF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9551
GTEX Portal (Tissue expression)ATP5MF
Human Protein AtlasENSG00000241468-ATP5MF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56134   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56134  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56134
Splice isoforms : SwissVarP56134
PhosPhoSitePlusP56134
Domains : Interpro (EBI)F1F0-ATPsyn_F_prd   
Domain families : Pfam (Sanger)WRW (PF10206)   
Domain families : Pfam (NCBI)pfam10206   
Conserved Domain (NCBI)ATP5MF
DMDM Disease mutations9551
Blocks (Seattle)ATP5MF
SuperfamilyP56134
Human Protein Atlas [tissue]ENSG00000241468-ATP5MF [tissue]
Peptide AtlasP56134
IPIIPI00220300   IPI01013118   IPI01010811   IPI00219291   IPI00719814   IPI00456013   IPI00973869   
Protein Interaction databases
DIP (DOE-UCLA)P56134
IntAct (EBI)P56134
FunCoupENSG00000241468
BioGRIDATP5MF
STRING (EMBL)ATP5MF
ZODIACATP5MF
Ontologies - Pathways
QuickGOP56134
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  nucleus  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  integral component of membrane  ATPase activity  transmembrane transporter activity  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton transmembrane transport  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  nucleus  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  integral component of membrane  ATPase activity  transmembrane transporter activity  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton transmembrane transport  
NDEx NetworkATP5MF
Atlas of Cancer Signalling NetworkATP5MF
Wikipedia pathwaysATP5MF
Orthology - Evolution
OrthoDB9551
GeneTree (enSembl)ENSG00000241468
Phylogenetic Trees/Animal Genes : TreeFamATP5MF
HOGENOMP56134
Homologs : HomoloGeneATP5MF
Homology/Alignments : Family Browser (UCSC)ATP5MF
Gene fusions - Rearrangements
Fusion : QuiverATP5MF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5MF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5MF
dbVarATP5MF
ClinVarATP5MF
1000_GenomesATP5MF 
Exome Variant ServerATP5MF
ExAC (Exome Aggregation Consortium)ENSG00000241468
GNOMAD BrowserENSG00000241468
Varsome BrowserATP5MF
Genetic variants : HAPMAP9551
Genomic Variants (DGV)ATP5MF [DGVbeta]
DECIPHERATP5MF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5MF 
Mutations
ICGC Data PortalATP5MF 
TCGA Data PortalATP5MF 
Broad Tumor PortalATP5MF
OASIS PortalATP5MF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5MF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP5MF
Mutations and Diseases : HGMDATP5MF
BioMutasearch ATP5MF
DgiDB (Drug Gene Interaction Database)ATP5MF
DoCM (Curated mutations)ATP5MF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5MF (select a term)
intoGenATP5MF
Cancer3DATP5MF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETATP5MF
MedgenATP5MF
Genetic Testing Registry ATP5MF
NextProtP56134 [Medical]
TSGene9551
GENETestsATP5MF
Target ValidationATP5MF
Huge Navigator ATP5MF [HugePedia]
snp3D : Map Gene to Disease9551
BioCentury BCIQATP5MF
ClinGenATP5MF
Clinical trials, drugs, therapy
Protein Interactions : CTD9551
Pharm GKB GenePA25138
Clinical trialATP5MF
Miscellaneous
canSAR (ICR)ATP5MF (select the gene name)
HarmonizomeATP5MF
DataMed IndexATP5MF
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5MF
EVEXATP5MF
GoPubMedATP5MF
iHOPATP5MF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 19:34:57 CEST 2020

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