Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATP5PB (ATP synthase peripheral stalk-membrane subunit b)

Identity

Alias (NCBI)ATP5F1
PIG47
HGNC (Hugo) ATP5PB
HGNC Previous nameATP5F1
HGNC Previous nameATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1
 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1
 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
LocusID (NCBI) 515
Atlas_Id 57321
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111449464 and ends at 111462773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ATP5PB   840
Cards
Entrez_Gene (NCBI)ATP5PB    ATP synthase peripheral stalk-membrane subunit b
AliasesATP5F1; PIG47
GeneCards (Weizmann)ATP5PB
Ensembl hg19 (Hinxton)ENSG00000116459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116459 [Gene_View]  ENSG00000116459 [Sequence]  chr1:111449464-111462773 [Contig_View]  ATP5PB [Vega]
ICGC DataPortalENSG00000116459
TCGA cBioPortalATP5PB
AceView (NCBI)ATP5PB
Genatlas (Paris)ATP5PB
SOURCE (Princeton)ATP5PB
Genetics Home Reference (NIH)ATP5PB
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5PB  -     chr1:111449464-111462773 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5PB  -     1p13.2   [Description]    (hg19-Feb_2009)
GoldenPathATP5PB - 1p13.2 [CytoView hg19]  ATP5PB - 1p13.2 [CytoView hg38]
ImmunoBaseENSG00000116459
genome Data Viewer NCBIATP5PB [Mapview hg19]  
OMIM603270   
Gene and transcription
Genbank (Entrez)AI754631 AK223018 AK291077 AK308266 AK311287
RefSeq transcript (Entrez)NM_001688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5PB
Alternative Splicing GalleryENSG00000116459
Gene ExpressionATP5PB [ NCBI-GEO ]   ATP5PB [ EBI - ARRAY_EXPRESS ]   ATP5PB [ SEEK ]   ATP5PB [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5PB [ Firebrowse - Broad ]
GenevisibleExpression of ATP5PB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)515
GTEX Portal (Tissue expression)ATP5PB
Human Protein AtlasENSG00000116459-ATP5PB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24539   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP24539  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP24539
Splice isoforms : SwissVarP24539
PhosPhoSitePlusP24539
Domains : Interpro (EBI)ATP_synth_Bsub_B/MI25    ATP_synth_F0_suB   
Domain families : Pfam (Sanger)Mt_ATP-synt_B (PF05405)   
Domain families : Pfam (NCBI)pfam05405   
Conserved Domain (NCBI)ATP5PB
Blocks (Seattle)ATP5PB
SuperfamilyP24539
Human Protein Atlas [tissue]ENSG00000116459-ATP5PB [tissue]
Peptide AtlasP24539
IPIIPI00029133   IPI00456747   
Protein Interaction databases
DIP (DOE-UCLA)P24539
IntAct (EBI)P24539
BioGRIDATP5PB
STRING (EMBL)ATP5PB
ZODIACATP5PB
Ontologies - Pathways
QuickGOP24539
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  protein binding  nucleus  nucleoplasm  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial matrix  ATP biosynthetic process  ATP synthesis coupled proton transport  membrane  substantia nigra development  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  protein binding  nucleus  nucleoplasm  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial matrix  ATP biosynthetic process  ATP synthesis coupled proton transport  membrane  substantia nigra development  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
NDEx NetworkATP5PB
Atlas of Cancer Signalling NetworkATP5PB
Wikipedia pathwaysATP5PB
Orthology - Evolution
OrthoDB515
GeneTree (enSembl)ENSG00000116459
Phylogenetic Trees/Animal Genes : TreeFamATP5PB
HOGENOMP24539
Homologs : HomoloGeneATP5PB
Homology/Alignments : Family Browser (UCSC)ATP5PB
Gene fusions - Rearrangements
Fusion : QuiverATP5PB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5PB [hg38]
dbVarATP5PB
ClinVarATP5PB
MonarchATP5PB
1000_GenomesATP5PB 
Exome Variant ServerATP5PB
GNOMAD BrowserENSG00000116459
Varsome BrowserATP5PB
Genomic Variants (DGV)ATP5PB [DGVbeta]
DECIPHERATP5PB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5PB 
Mutations
ICGC Data PortalATP5PB 
TCGA Data PortalATP5PB 
Broad Tumor PortalATP5PB
OASIS PortalATP5PB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5PB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP5PB
Mutations and Diseases : HGMDATP5PB
BioMutasearch ATP5PB
DgiDB (Drug Gene Interaction Database)ATP5PB
DoCM (Curated mutations)ATP5PB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5PB (select a term)
intoGenATP5PB
Cancer3DATP5PB(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603270   
Orphanet
DisGeNETATP5PB
MedgenATP5PB
Genetic Testing Registry ATP5PB
NextProtP24539 [Medical]
GENETestsATP5PB
Target ValidationATP5PB
Huge Navigator ATP5PB [HugePedia]
ClinGenATP5PB
Clinical trials, drugs, therapy
MyCancerGenomeATP5PB
Protein Interactions : CTD
Pharm GKB GenePA25130
PharosP24539
Clinical trialATP5PB
Miscellaneous
canSAR (ICR)ATP5PB (select the gene name)
HarmonizomeATP5PB
DataMed IndexATP5PB
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATP5PB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:06:37 CET 2021
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