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ATP5PF (ATP synthase peripheral stalk subunit F6)

Identity

Other aliasATP5
ATP5A
ATP5J
ATPM
CF6
F6
HGNC (Hugo) ATP5PF
LocusID (NCBI) 522
Atlas_Id 57348
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 25724480 and ends at 25735654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATP5PF   847
Cards
Entrez_Gene (NCBI)ATP5PF  522  ATP synthase peripheral stalk subunit F6
AliasesATP5; ATP5A; ATP5J; ATPM; 
CF6; F6
GeneCards (Weizmann)ATP5PF
Ensembl hg19 (Hinxton)ENSG00000154723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154723 [Gene_View]  ENSG00000154723 [Sequence]  chr21:25724480-25735654 [Contig_View]  ATP5PF [Vega]
ICGC DataPortalENSG00000154723
TCGA cBioPortalATP5PF
AceView (NCBI)ATP5PF
Genatlas (Paris)ATP5PF
WikiGenes522
SOURCE (Princeton)ATP5PF
Genetics Home Reference (NIH)ATP5PF
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5PF  -     chr21:25724480-25735654 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5PF  -     21q21.3   [Description]    (hg19-Feb_2009)
EnsemblATP5PF - 21q21.3 [CytoView hg19]  ATP5PF - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBIATP5PF [Mapview hg19]  ATP5PF [Mapview hg38]
OMIM603152   
Gene and transcription
Genbank (Entrez)AA364611 AI085837 AK311899 AL110183 AY544129
RefSeq transcript (Entrez)NM_001003696 NM_001003697 NM_001003701 NM_001003703 NM_001320266 NM_001320267 NM_001685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5PF
Cluster EST : UnigeneHs.246310 [ NCBI ]
CGAP (NCI)Hs.246310
Alternative Splicing GalleryENSG00000154723
Gene ExpressionATP5PF [ NCBI-GEO ]   ATP5PF [ EBI - ARRAY_EXPRESS ]   ATP5PF [ SEEK ]   ATP5PF [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5PF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)522
GTEX Portal (Tissue expression)ATP5PF
Human Protein AtlasENSG00000154723-ATP5PF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP18859   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP18859  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP18859
Splice isoforms : SwissVarP18859
PhosPhoSitePlusP18859
Domains : Interpro (EBI)ATP_synth_f6_mt    ATP_synth_f6_sf_mt   
Domain families : Pfam (Sanger)ATP-synt_F6 (PF05511)   
Domain families : Pfam (NCBI)pfam05511   
Conserved Domain (NCBI)ATP5PF
DMDM Disease mutations522
Blocks (Seattle)ATP5PF
SuperfamilyP18859
Human Protein Atlas [tissue]ENSG00000154723-ATP5PF [tissue]
Peptide AtlasP18859
IPIIPI00002521   IPI00456008   IPI00794158   
Protein Interaction databases
DIP (DOE-UCLA)P18859
IntAct (EBI)P18859
FunCoupENSG00000154723
BioGRIDATP5PF
STRING (EMBL)ATP5PF
ZODIACATP5PF
Ontologies - Pathways
QuickGOP18859
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  proton transmembrane transporter activity  ATPase activity  substantia nigra development  transmembrane transporter activity  cristae formation  mitochondrial ATP synthesis coupled proton transport  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  proton transmembrane transporter activity  ATPase activity  substantia nigra development  transmembrane transporter activity  cristae formation  mitochondrial ATP synthesis coupled proton transport  
NDEx NetworkATP5PF
Atlas of Cancer Signalling NetworkATP5PF
Wikipedia pathwaysATP5PF
Orthology - Evolution
OrthoDB522
GeneTree (enSembl)ENSG00000154723
Phylogenetic Trees/Animal Genes : TreeFamATP5PF
HOVERGENP18859
HOGENOMP18859
Homologs : HomoloGeneATP5PF
Homology/Alignments : Family Browser (UCSC)ATP5PF
Gene fusions - Rearrangements
Fusion : QuiverATP5PF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5PF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5PF
dbVarATP5PF
ClinVarATP5PF
1000_GenomesATP5PF 
Exome Variant ServerATP5PF
ExAC (Exome Aggregation Consortium)ENSG00000154723
GNOMAD BrowserENSG00000154723
Varsome BrowserATP5PF
Genetic variants : HAPMAP522
Genomic Variants (DGV)ATP5PF [DGVbeta]
DECIPHERATP5PF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5PF 
Mutations
ICGC Data PortalATP5PF 
TCGA Data PortalATP5PF 
Broad Tumor PortalATP5PF
OASIS PortalATP5PF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP5PF
BioMutasearch ATP5PF
DgiDB (Drug Gene Interaction Database)ATP5PF
DoCM (Curated mutations)ATP5PF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5PF (select a term)
intoGenATP5PF
Cancer3DATP5PF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603152   
Orphanet
DisGeNETATP5PF
MedgenATP5PF
Genetic Testing Registry ATP5PF
NextProtP18859 [Medical]
TSGene522
GENETestsATP5PF
Target ValidationATP5PF
Huge Navigator ATP5PF [HugePedia]
snp3D : Map Gene to Disease522
BioCentury BCIQATP5PF
ClinGenATP5PF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD522
Chemical/Pharm GKB GenePA25137
Clinical trialATP5PF
Miscellaneous
canSAR (ICR)ATP5PF (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5PF
EVEXATP5PF
GoPubMedATP5PF
iHOPATP5PF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:53:03 CET 2018

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