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ATP5PO (ATP synthase peripheral stalk subunit OSCP)

Identity

Other aliasATP5O
ATPO
HMC08D05
OSCP
HGNC (Hugo) ATP5PO
LocusID (NCBI) 539
Atlas_Id 80475
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33903453 and ends at 33915854 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATP5PO   850
Cards
Entrez_Gene (NCBI)ATP5PO  539  ATP synthase peripheral stalk subunit OSCP
AliasesATP5O; ATPO; HMC08D05; OSCP
GeneCards (Weizmann)ATP5PO
Ensembl hg19 (Hinxton)ENSG00000241837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241837 [Gene_View]  ENSG00000241837 [Sequence]  chr21:33903453-33915854 [Contig_View]  ATP5PO [Vega]
ICGC DataPortalENSG00000241837
TCGA cBioPortalATP5PO
AceView (NCBI)ATP5PO
Genatlas (Paris)ATP5PO
WikiGenes539
SOURCE (Princeton)ATP5PO
Genetics Home Reference (NIH)ATP5PO
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5PO  -     chr21:33903453-33915854 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5PO  -     21q22.11   [Description]    (hg19-Feb_2009)
GoldenPathATP5PO - 21q22.11 [CytoView hg19]  ATP5PO - 21q22.11 [CytoView hg38]
ImmunoBaseENSG00000241837
Mapping of homologs : NCBIATP5PO [Mapview hg19]  ATP5PO [Mapview hg38]
OMIM600828   
Gene and transcription
Genbank (Entrez)AF088071 AK093795 AK124187 AK222608 AK222962
RefSeq transcript (Entrez)NM_001697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5PO
Alternative Splicing GalleryENSG00000241837
Gene ExpressionATP5PO [ NCBI-GEO ]   ATP5PO [ EBI - ARRAY_EXPRESS ]   ATP5PO [ SEEK ]   ATP5PO [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5PO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)539
GTEX Portal (Tissue expression)ATP5PO
Human Protein AtlasENSG00000241837-ATP5PO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48047   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48047  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48047
Splice isoforms : SwissVarP48047
PhosPhoSitePlusP48047
Domaine pattern : Prosite (Expaxy)ATPASE_DELTA (PS00389)   
Domains : Interpro (EBI)ATP_synth_OSCP/delta_N_sf    ATPase_OSCP/d_CS    ATPase_OSCP/dsu   
Domain families : Pfam (Sanger)OSCP (PF00213)   
Domain families : Pfam (NCBI)pfam00213   
Conserved Domain (NCBI)ATP5PO
DMDM Disease mutations539
Blocks (Seattle)ATP5PO
SuperfamilyP48047
Human Protein Atlas [tissue]ENSG00000241837-ATP5PO [tissue]
Peptide AtlasP48047
IPIIPI00007611   IPI00878218   IPI00853134   IPI00878045   IPI00893479   
Protein Interaction databases
DIP (DOE-UCLA)P48047
IntAct (EBI)P48047
FunCoupENSG00000241837
BioGRIDATP5PO
STRING (EMBL)ATP5PO
ZODIACATP5PO
Ontologies - Pathways
QuickGOP48047
Ontology : AmiGOprotein binding  nucleus  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  plasma membrane  ATP biosynthetic process  ATP biosynthetic process  drug binding  ATPase activity  ATPase activity  transmembrane transporter activity  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  proton transmembrane transport  
Ontology : EGO-EBIprotein binding  nucleus  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  plasma membrane  ATP biosynthetic process  ATP biosynthetic process  drug binding  ATPase activity  ATPase activity  transmembrane transporter activity  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  proton transmembrane transport  
NDEx NetworkATP5PO
Atlas of Cancer Signalling NetworkATP5PO
Wikipedia pathwaysATP5PO
Orthology - Evolution
OrthoDB539
GeneTree (enSembl)ENSG00000241837
Phylogenetic Trees/Animal Genes : TreeFamATP5PO
HOGENOMP48047
Homologs : HomoloGeneATP5PO
Homology/Alignments : Family Browser (UCSC)ATP5PO
Gene fusions - Rearrangements
Fusion : QuiverATP5PO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5PO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5PO
dbVarATP5PO
ClinVarATP5PO
1000_GenomesATP5PO 
Exome Variant ServerATP5PO
ExAC (Exome Aggregation Consortium)ENSG00000241837
GNOMAD BrowserENSG00000241837
Varsome BrowserATP5PO
Genetic variants : HAPMAP539
Genomic Variants (DGV)ATP5PO [DGVbeta]
DECIPHERATP5PO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5PO 
Mutations
ICGC Data PortalATP5PO 
TCGA Data PortalATP5PO 
Broad Tumor PortalATP5PO
OASIS PortalATP5PO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5PO  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP5PO
Mutations and Diseases : HGMDATP5PO
BioMutasearch ATP5PO
DgiDB (Drug Gene Interaction Database)ATP5PO
DoCM (Curated mutations)ATP5PO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5PO (select a term)
intoGenATP5PO
Cancer3DATP5PO(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600828   
Orphanet
DisGeNETATP5PO
MedgenATP5PO
Genetic Testing Registry ATP5PO
NextProtP48047 [Medical]
TSGene539
GENETestsATP5PO
Target ValidationATP5PO
Huge Navigator ATP5PO [HugePedia]
snp3D : Map Gene to Disease539
BioCentury BCIQATP5PO
ClinGenATP5PO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD539
Chemical/Pharm GKB GenePA25144
Clinical trialATP5PO
Miscellaneous
canSAR (ICR)ATP5PO (select the gene name)
DataMed IndexATP5PO
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5PO
EVEXATP5PO
GoPubMedATP5PO
iHOPATP5PO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:23:13 CET 2020

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