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ATP5S (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B))

Identity

Alias_namesATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)
Alias_symbol (synonym)HSU79253
ATPW
Other aliasFB
HGNC (Hugo) ATP5S
LocusID (NCBI) 27109
Atlas_Id 60632
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 50779047 and ends at 50792946 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP5S (14q21.3) / SRP54 (14q13.2)ATP5S (14q21.3) / TNS3 (7p12.3)DLEU1 (13q14.2) / ATP5S (14q21.3)
LSM12 (17q21.31) / ATP5S (14q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5S   18799
Cards
Entrez_Gene (NCBI)ATP5S  27109  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)
AliasesATPW; FB; HSU79253
GeneCards (Weizmann)ATP5S
Ensembl hg19 (Hinxton)ENSG00000125375 [Gene_View]  chr14:50779047-50792946 [Contig_View]  ATP5S [Vega]
Ensembl hg38 (Hinxton)ENSG00000125375 [Gene_View]  chr14:50779047-50792946 [Contig_View]  ATP5S [Vega]
ICGC DataPortalENSG00000125375
TCGA cBioPortalATP5S
AceView (NCBI)ATP5S
Genatlas (Paris)ATP5S
WikiGenes27109
SOURCE (Princeton)ATP5S
Genetics Home Reference (NIH)ATP5S
Genomic and cartography
GoldenPath hg19 (UCSC)ATP5S  -     chr14:50779047-50792946 +  14q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATP5S  -     14q21.3   [Description]    (hg38-Dec_2013)
EnsemblATP5S - 14q21.3 [CytoView hg19]  ATP5S - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBIATP5S [Mapview hg19]  ATP5S [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF052186 AF390029 AK290008 AY052377 BC011549
RefSeq transcript (Entrez)NM_001003803 NM_001003805 NM_015684
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)ATP5S
Cluster EST : UnigeneHs.438489 [ NCBI ]
CGAP (NCI)Hs.438489
Alternative Splicing GalleryENSG00000125375
Gene ExpressionATP5S [ NCBI-GEO ]   ATP5S [ EBI - ARRAY_EXPRESS ]   ATP5S [ SEEK ]   ATP5S [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5S [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27109
GTEX Portal (Tissue expression)ATP5S
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99766   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99766  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99766
Splice isoforms : SwissVarQ99766
PhosPhoSitePlusQ99766
Domains : Interpro (EBI)ATP_synthase_s   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP5S
DMDM Disease mutations27109
Blocks (Seattle)ATP5S
SuperfamilyQ99766
Human Protein AtlasENSG00000125375
Peptide AtlasQ99766
HPRD12503
IPIIPI00017816   IPI00455157   IPI00257300   IPI01025842   IPI00383160   
Protein Interaction databases
DIP (DOE-UCLA)Q99766
IntAct (EBI)Q99766
FunCoupENSG00000125375
BioGRIDATP5S
STRING (EMBL)ATP5S
ZODIACATP5S
Ontologies - Pathways
QuickGOQ99766
Ontology : AmiGOmitochondrial inner membrane  hydrogen ion transmembrane transporter activity  proton transport  respiratory electron transport chain  mitochondrial ATP synthesis coupled proton transport  cellular metabolic process  small molecule metabolic process  proton-transporting ATP synthase complex, coupling factor F(o)  metal ion binding  
Ontology : EGO-EBImitochondrial inner membrane  hydrogen ion transmembrane transporter activity  proton transport  respiratory electron transport chain  mitochondrial ATP synthesis coupled proton transport  cellular metabolic process  small molecule metabolic process  proton-transporting ATP synthase complex, coupling factor F(o)  metal ion binding  
NDEx NetworkATP5S
Atlas of Cancer Signalling NetworkATP5S
Wikipedia pathwaysATP5S
Orthology - Evolution
OrthoDB27109
GeneTree (enSembl)ENSG00000125375
Phylogenetic Trees/Animal Genes : TreeFamATP5S
HOVERGENQ99766
HOGENOMQ99766
Homologs : HomoloGeneATP5S
Homology/Alignments : Family Browser (UCSC)ATP5S
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5S [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5S
dbVarATP5S
ClinVarATP5S
1000_GenomesATP5S 
Exome Variant ServerATP5S
ExAC (Exome Aggregation Consortium)ATP5S (select the gene name)
Genetic variants : HAPMAP27109
Genomic Variants (DGV)ATP5S [DGVbeta]
DECIPHER (Syndromes)14:50779047-50792946  ENSG00000125375
CONAN: Copy Number AnalysisATP5S 
Mutations
ICGC Data PortalATP5S 
TCGA Data PortalATP5S 
Broad Tumor PortalATP5S
OASIS PortalATP5S [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5S  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5S
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5S
DgiDB (Drug Gene Interaction Database)ATP5S
DoCM (Curated mutations)ATP5S (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5S (select a term)
intoGenATP5S
Cancer3DATP5S(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP5S
Genetic Testing Registry ATP5S
NextProtQ99766 [Medical]
TSGene27109
GENETestsATP5S
Huge Navigator ATP5S [HugePedia]
snp3D : Map Gene to Disease27109
BioCentury BCIQATP5S
ClinGenATP5S
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27109
Chemical/Pharm GKB GenePA134991095
Clinical trialATP5S
Miscellaneous
canSAR (ICR)ATP5S (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5S
EVEXATP5S
GoPubMedATP5S
iHOPATP5S
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:24 CET 2017

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