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ATP5SL (ATP5S like)

Identity

Alias_symbol (synonym)FLJ10241
Other alias-
HGNC (Hugo) ATP5SL
LocusID (NCBI) 55101
Atlas_Id 60633
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41431318 and ends at 41439576 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5SL   25496
Cards
Entrez_Gene (NCBI)ATP5SL  55101  ATP5S like
Aliases
GeneCards (Weizmann)ATP5SL
Ensembl hg19 (Hinxton)ENSG00000105341 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105341 [Gene_View]  chr19:41431318-41439576 [Contig_View]  ATP5SL [Vega]
ICGC DataPortalENSG00000105341
TCGA cBioPortalATP5SL
AceView (NCBI)ATP5SL
Genatlas (Paris)ATP5SL
WikiGenes55101
SOURCE (Princeton)ATP5SL
Genetics Home Reference (NIH)ATP5SL
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5SL  -     chr19:41431318-41439576 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5SL  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblATP5SL - 19q13.2 [CytoView hg19]  ATP5SL - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIATP5SL [Mapview hg19]  ATP5SL [Mapview hg38]
OMIM617262   
Gene and transcription
Genbank (Entrez)AK001103 AK055565 AK123631 AK293132 AK294249
RefSeq transcript (Entrez)NM_001167867 NM_001167868 NM_001167869 NM_001167870 NM_001167871 NM_001320838 NM_001320839 NM_001320840 NM_001320841 NM_001320844 NM_018035
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5SL
Cluster EST : UnigeneHs.351099 [ NCBI ]
CGAP (NCI)Hs.351099
Alternative Splicing GalleryENSG00000105341
Gene ExpressionATP5SL [ NCBI-GEO ]   ATP5SL [ EBI - ARRAY_EXPRESS ]   ATP5SL [ SEEK ]   ATP5SL [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5SL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55101
GTEX Portal (Tissue expression)ATP5SL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW81
Splice isoforms : SwissVarQ9NW81
PhosPhoSitePlusQ9NW81
Domains : Interpro (EBI)L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP5SL
DMDM Disease mutations55101
Blocks (Seattle)ATP5SL
SuperfamilyQ9NW81
Human Protein AtlasENSG00000105341
Peptide AtlasQ9NW81
HPRD07655
IPIIPI00942215   IPI00060651   IPI01018713   IPI00301428   IPI01015373   IPI00910761   IPI00954476   IPI00910289   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW81
IntAct (EBI)Q9NW81
FunCoupENSG00000105341
BioGRIDATP5SL
STRING (EMBL)ATP5SL
ZODIACATP5SL
Ontologies - Pathways
QuickGOQ9NW81
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkATP5SL
Atlas of Cancer Signalling NetworkATP5SL
Wikipedia pathwaysATP5SL
Orthology - Evolution
OrthoDB55101
GeneTree (enSembl)ENSG00000105341
Phylogenetic Trees/Animal Genes : TreeFamATP5SL
HOVERGENQ9NW81
HOGENOMQ9NW81
Homologs : HomoloGeneATP5SL
Homology/Alignments : Family Browser (UCSC)ATP5SL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5SL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5SL
dbVarATP5SL
ClinVarATP5SL
1000_GenomesATP5SL 
Exome Variant ServerATP5SL
ExAC (Exome Aggregation Consortium)ATP5SL (select the gene name)
Genetic variants : HAPMAP55101
Genomic Variants (DGV)ATP5SL [DGVbeta]
DECIPHERATP5SL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5SL 
Mutations
ICGC Data PortalATP5SL 
TCGA Data PortalATP5SL 
Broad Tumor PortalATP5SL
OASIS PortalATP5SL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5SL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5SL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP5SL
DgiDB (Drug Gene Interaction Database)ATP5SL
DoCM (Curated mutations)ATP5SL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5SL (select a term)
intoGenATP5SL
Cancer3DATP5SL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617262   
Orphanet
MedgenATP5SL
Genetic Testing Registry ATP5SL
NextProtQ9NW81 [Medical]
TSGene55101
GENETestsATP5SL
Target ValidationATP5SL
Huge Navigator ATP5SL [HugePedia]
snp3D : Map Gene to Disease55101
BioCentury BCIQATP5SL
ClinGenATP5SL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55101
Chemical/Pharm GKB GenePA162377263
Clinical trialATP5SL
Miscellaneous
canSAR (ICR)ATP5SL (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5SL
EVEXATP5SL
GoPubMedATP5SL
iHOPATP5SL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:02 CEST 2017

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