Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATP6V0D2 (ATPase H+ transporting V0 subunit d2)

Identity

Alias_namesATPase, H transporting, lysosomal 38kD, V0 subunit d isoform 2
ATPase, H transporting, lysosomal 38kDa, V0 subunit d isoform 2
ATPase, H transporting, lysosomal 38kDa, V0 subunit D2
ATPase, H transporting, lysosomal 38kDa, V0 subunit d2
Alias_symbol (synonym)FLJ38708
VMA6
ATP6D2
Other alias
HGNC (Hugo) ATP6V0D2
LocusID (NCBI) 245972
Atlas_Id 56085
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 86098910 and ends at 86154225 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP6V0D2   18266
Cards
Entrez_Gene (NCBI)ATP6V0D2  245972  ATPase H+ transporting V0 subunit d2
AliasesATP6D2; VMA6
GeneCards (Weizmann)ATP6V0D2
Ensembl hg19 (Hinxton)ENSG00000147614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147614 [Gene_View]  chr8:86098910-86154225 [Contig_View]  ATP6V0D2 [Vega]
ICGC DataPortalENSG00000147614
TCGA cBioPortalATP6V0D2
AceView (NCBI)ATP6V0D2
Genatlas (Paris)ATP6V0D2
WikiGenes245972
SOURCE (Princeton)ATP6V0D2
Genetics Home Reference (NIH)ATP6V0D2
Genomic and cartography
GoldenPath hg38 (UCSC)ATP6V0D2  -     chr8:86098910-86154225 +  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP6V0D2  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblATP6V0D2 - 8q21.3 [CytoView hg19]  ATP6V0D2 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIATP6V0D2 [Mapview hg19]  ATP6V0D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096027 AY079172 BC065207
RefSeq transcript (Entrez)NM_152565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP6V0D2
Cluster EST : UnigeneHs.436360 [ NCBI ]
CGAP (NCI)Hs.436360
Alternative Splicing GalleryENSG00000147614
Gene ExpressionATP6V0D2 [ NCBI-GEO ]   ATP6V0D2 [ EBI - ARRAY_EXPRESS ]   ATP6V0D2 [ SEEK ]   ATP6V0D2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP6V0D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245972
GTEX Portal (Tissue expression)ATP6V0D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8Y2
Splice isoforms : SwissVarQ8N8Y2
PhosPhoSitePlusQ8N8Y2
Domains : Interpro (EBI)ATPase_V0-cplx_csu/dsu    ATPase_V0-cplx_dsu   
Domain families : Pfam (Sanger)vATP-synt_AC39 (PF01992)   
Domain families : Pfam (NCBI)pfam01992   
Conserved Domain (NCBI)ATP6V0D2
DMDM Disease mutations245972
Blocks (Seattle)ATP6V0D2
SuperfamilyQ8N8Y2
Human Protein AtlasENSG00000147614
Peptide AtlasQ8N8Y2
HPRD16522
IPIIPI00167639   IPI00979549   IPI00980223   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8Y2
IntAct (EBI)Q8N8Y2
FunCoupENSG00000147614
BioGRIDATP6V0D2
STRING (EMBL)ATP6V0D2
ZODIACATP6V0D2
Ontologies - Pathways
QuickGOQ8N8Y2
Ontology : AmiGOprotein binding  early endosome  insulin receptor signaling pathway  endosome membrane  hydrogen ion transmembrane transporter activity  ATP hydrolysis coupled proton transport  membrane  regulation of macroautophagy  apical plasma membrane  vacuolar proton-transporting V-type ATPase complex  phagocytic vesicle membrane  proton-transporting V-type ATPase, V0 domain  transferrin transport  ion transmembrane transport  extracellular exosome  phagosome acidification  
Ontology : EGO-EBIprotein binding  early endosome  insulin receptor signaling pathway  endosome membrane  hydrogen ion transmembrane transporter activity  ATP hydrolysis coupled proton transport  membrane  regulation of macroautophagy  apical plasma membrane  vacuolar proton-transporting V-type ATPase complex  phagocytic vesicle membrane  proton-transporting V-type ATPase, V0 domain  transferrin transport  ion transmembrane transport  extracellular exosome  phagosome acidification  
Pathways : KEGG   
NDEx NetworkATP6V0D2
Atlas of Cancer Signalling NetworkATP6V0D2
Wikipedia pathwaysATP6V0D2
Orthology - Evolution
OrthoDB245972
GeneTree (enSembl)ENSG00000147614
Phylogenetic Trees/Animal Genes : TreeFamATP6V0D2
HOVERGENQ8N8Y2
HOGENOMQ8N8Y2
Homologs : HomoloGeneATP6V0D2
Homology/Alignments : Family Browser (UCSC)ATP6V0D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP6V0D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP6V0D2
dbVarATP6V0D2
ClinVarATP6V0D2
1000_GenomesATP6V0D2 
Exome Variant ServerATP6V0D2
ExAC (Exome Aggregation Consortium)ATP6V0D2 (select the gene name)
Genetic variants : HAPMAP245972
Genomic Variants (DGV)ATP6V0D2 [DGVbeta]
DECIPHERATP6V0D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP6V0D2 
Mutations
ICGC Data PortalATP6V0D2 
TCGA Data PortalATP6V0D2 
Broad Tumor PortalATP6V0D2
OASIS PortalATP6V0D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP6V0D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP6V0D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP6V0D2
DgiDB (Drug Gene Interaction Database)ATP6V0D2
DoCM (Curated mutations)ATP6V0D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP6V0D2 (select a term)
intoGenATP6V0D2
Cancer3DATP6V0D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP6V0D2
Genetic Testing Registry ATP6V0D2
NextProtQ8N8Y2 [Medical]
TSGene245972
GENETestsATP6V0D2
Target ValidationATP6V0D2
Huge Navigator ATP6V0D2 [HugePedia]
snp3D : Map Gene to Disease245972
BioCentury BCIQATP6V0D2
ClinGenATP6V0D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245972
Chemical/Pharm GKB GenePA38516
Clinical trialATP6V0D2
Miscellaneous
canSAR (ICR)ATP6V0D2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP6V0D2
EVEXATP6V0D2
GoPubMedATP6V0D2
iHOPATP6V0D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:58:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.