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ATP6V1F (ATPase H+ transporting V1 subunit F)

Identity

Alias_namesATPase
Alias_symbol (synonym)ATP6S14
VATF
Vma7
Other alias
HGNC (Hugo) ATP6V1F
LocusID (NCBI) 9296
Atlas_Id 726
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128862803 and ends at 128865849 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP6V1F (7q32.1) / CPED1 (7q31.31)FLNC (7q32.1) / ATP6V1F (7q32.1)ATP6V1F 7q32.1 C7orf58

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP6V1F   16832
Cards
Entrez_Gene (NCBI)ATP6V1F  9296  ATPase H+ transporting V1 subunit F
AliasesATP6S14; VATF; Vma7
GeneCards (Weizmann)ATP6V1F
Ensembl hg19 (Hinxton)ENSG00000128524 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128524 [Gene_View]  chr7:128862803-128865849 [Contig_View]  ATP6V1F [Vega]
ICGC DataPortalENSG00000128524
TCGA cBioPortalATP6V1F
AceView (NCBI)ATP6V1F
Genatlas (Paris)ATP6V1F
WikiGenes9296
SOURCE (Princeton)ATP6V1F
Genetics Home Reference (NIH)ATP6V1F
Genomic and cartography
GoldenPath hg38 (UCSC)ATP6V1F  -     chr7:128862803-128865849 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP6V1F  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblATP6V1F - 7q32.1 [CytoView hg19]  ATP6V1F - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIATP6V1F [Mapview hg19]  ATP6V1F [Mapview hg38]
OMIM607160   
Gene and transcription
Genbank (Entrez)AK312214 BC104230 BC104231 BC107854 BG724326
RefSeq transcript (Entrez)NM_001198909 NM_004231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP6V1F
Cluster EST : UnigeneHs.78089 [ NCBI ]
CGAP (NCI)Hs.78089
Alternative Splicing GalleryENSG00000128524
Gene ExpressionATP6V1F [ NCBI-GEO ]   ATP6V1F [ EBI - ARRAY_EXPRESS ]   ATP6V1F [ SEEK ]   ATP6V1F [ MEM ]
Gene Expression Viewer (FireBrowse)ATP6V1F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9296
GTEX Portal (Tissue expression)ATP6V1F
Human Protein AtlasENSG00000128524-ATP6V1F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16864   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16864  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16864
Splice isoforms : SwissVarQ16864
PhosPhoSitePlusQ16864
Domains : Interpro (EBI)ATPase_V1-cplx_f_g_su    ATPase_V1-cplx_fsu_euk   
Domain families : Pfam (Sanger)ATP-synt_F (PF01990)   
Domain families : Pfam (NCBI)pfam01990   
Conserved Domain (NCBI)ATP6V1F
DMDM Disease mutations9296
Blocks (Seattle)ATP6V1F
SuperfamilyQ16864
Human Protein Atlas [tissue]ENSG00000128524-ATP6V1F [tissue]
Peptide AtlasQ16864
HPRD06198
IPIIPI00004488   IPI00946714   
Protein Interaction databases
DIP (DOE-UCLA)Q16864
IntAct (EBI)Q16864
FunCoupENSG00000128524
BioGRIDATP6V1F
STRING (EMBL)ATP6V1F
ZODIACATP6V1F
Ontologies - Pathways
QuickGOQ16864
Ontology : AmiGOprotein binding  cytosol  insulin receptor signaling pathway  hydrogen ion transmembrane transporter activity  ATP hydrolysis coupled proton transport  proton transport  membrane  proton-transporting two-sector ATPase complex  vacuolar proton-transporting V-type ATPase complex  proton-transporting V-type ATPase, V1 domain  transferrin transport  ion transmembrane transport  ATPase activity, uncoupled  ATPase coupled ion transmembrane transporter activity  proton-transporting ATPase activity, rotational mechanism  extracellular exosome  phagosome acidification  
Ontology : EGO-EBIprotein binding  cytosol  insulin receptor signaling pathway  hydrogen ion transmembrane transporter activity  ATP hydrolysis coupled proton transport  proton transport  membrane  proton-transporting two-sector ATPase complex  vacuolar proton-transporting V-type ATPase complex  proton-transporting V-type ATPase, V1 domain  transferrin transport  ion transmembrane transport  ATPase activity, uncoupled  ATPase coupled ion transmembrane transporter activity  proton-transporting ATPase activity, rotational mechanism  extracellular exosome  phagosome acidification  
Pathways : KEGG   
NDEx NetworkATP6V1F
Atlas of Cancer Signalling NetworkATP6V1F
Wikipedia pathwaysATP6V1F
Orthology - Evolution
OrthoDB9296
GeneTree (enSembl)ENSG00000128524
Phylogenetic Trees/Animal Genes : TreeFamATP6V1F
HOVERGENQ16864
HOGENOMQ16864
Homologs : HomoloGeneATP6V1F
Homology/Alignments : Family Browser (UCSC)ATP6V1F
Gene fusions - Rearrangements
Fusion : MitelmanATP6V1F/CPED1 [7q32.1/7q31.31]  
Fusion: TCGA_MDACCATP6V1F 7q32.1 C7orf58 LUSC
Tumor Fusion PortalATP6V1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP6V1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP6V1F
dbVarATP6V1F
ClinVarATP6V1F
1000_GenomesATP6V1F 
Exome Variant ServerATP6V1F
ExAC (Exome Aggregation Consortium)ENSG00000128524
GNOMAD BrowserENSG00000128524
Genetic variants : HAPMAP9296
Genomic Variants (DGV)ATP6V1F [DGVbeta]
DECIPHERATP6V1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP6V1F 
Mutations
ICGC Data PortalATP6V1F 
TCGA Data PortalATP6V1F 
Broad Tumor PortalATP6V1F
OASIS PortalATP6V1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP6V1F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP6V1F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP6V1F
DgiDB (Drug Gene Interaction Database)ATP6V1F
DoCM (Curated mutations)ATP6V1F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP6V1F (select a term)
intoGenATP6V1F
Cancer3DATP6V1F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607160   
Orphanet
DisGeNETATP6V1F
MedgenATP6V1F
Genetic Testing Registry ATP6V1F
NextProtQ16864 [Medical]
TSGene9296
GENETestsATP6V1F
Target ValidationATP6V1F
Huge Navigator ATP6V1F [HugePedia]
snp3D : Map Gene to Disease9296
BioCentury BCIQATP6V1F
ClinGenATP6V1F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9296
Chemical/Pharm GKB GenePA38421
Clinical trialATP6V1F
Miscellaneous
canSAR (ICR)ATP6V1F (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP6V1F
EVEXATP6V1F
GoPubMedATP6V1F
iHOPATP6V1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:04:17 CET 2017

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