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ATP6V1G1 (ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1)

Identity

Alias_namesATP6J
ATP6G1
ATPase, H+ transporting, lysosomal (vacuolar proton pump), member J
ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 1
ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1
Alias_symbol (synonym)ATP6GL
Vma10
ATP6G
DKFZp547P234
Other alias
HGNC (Hugo) ATP6V1G1
LocusID (NCBI) 9550
Atlas_Id 60647
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 117349994 and ends at 117361152 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP6V1G1 (9q32) / ATP6V1G1 (9q32)ATP6V1G1 (9q32) / CSNK1D (17q25.3)ATP6V1G1 (9q32) / TMBIM6 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP6V1G1   864
Cards
Entrez_Gene (NCBI)ATP6V1G1  9550  ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1
AliasesATP6G; ATP6G1; ATP6GL; ATP6J; 
Vma10
GeneCards (Weizmann)ATP6V1G1
Ensembl hg19 (Hinxton) [Gene_View]  chr9:117349994-117361152 [Contig_View]  ATP6V1G1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:117349994-117361152 [Contig_View]  ATP6V1G1 [Vega]
TCGA cBioPortalATP6V1G1
AceView (NCBI)ATP6V1G1
Genatlas (Paris)ATP6V1G1
WikiGenes9550
SOURCE (Princeton)ATP6V1G1
Genetics Home Reference (NIH)ATP6V1G1
Genomic and cartography
GoldenPath hg19 (UCSC)ATP6V1G1  -     chr9:117349994-117361152 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATP6V1G1  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblATP6V1G1 - 9q32 [CytoView hg19]  ATP6V1G1 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIATP6V1G1 [Mapview hg19]  ATP6V1G1 [Mapview hg38]
OMIM607296   
Gene and transcription
Genbank (Entrez)AF038954 AI092246 BC003564 BC008452 BF692207
RefSeq transcript (Entrez)NM_004888
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ATP6V1G1
Cluster EST : UnigeneHs.388654 [ NCBI ]
CGAP (NCI)Hs.388654
Gene ExpressionATP6V1G1 [ NCBI-GEO ]   ATP6V1G1 [ EBI - ARRAY_EXPRESS ]   ATP6V1G1 [ SEEK ]   ATP6V1G1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP6V1G1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9550
GTEX Portal (Tissue expression)ATP6V1G1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75348   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75348  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75348
Splice isoforms : SwissVarO75348
PhosPhoSitePlusO75348
Domains : Interpro (EBI)V-ATPase_G   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP6V1G1
DMDM Disease mutations9550
Blocks (Seattle)ATP6V1G1
SuperfamilyO75348
Peptide AtlasO75348
HPRD06294
IPIIPI00025285   
Protein Interaction databases
DIP (DOE-UCLA)O75348
IntAct (EBI)O75348
BioGRIDATP6V1G1
STRING (EMBL)ATP6V1G1
ZODIACATP6V1G1
Ontologies - Pathways
QuickGOO75348
Ontology : AmiGOprotein binding  lysosomal membrane  cytosol  cytosol  plasma membrane  plasma membrane  cellular iron ion homeostasis  metabolic process  insulin receptor signaling pathway  hydrogen-exporting ATPase activity, phosphorylative mechanism  vacuolar proton-transporting V-type ATPase complex  transferrin transport  ion transmembrane transport  ATPase binding  interaction with host  transmembrane transport  extracellular exosome  phagosome maturation  hydrogen ion transmembrane transport  
Ontology : EGO-EBIprotein binding  lysosomal membrane  cytosol  cytosol  plasma membrane  plasma membrane  cellular iron ion homeostasis  metabolic process  insulin receptor signaling pathway  hydrogen-exporting ATPase activity, phosphorylative mechanism  vacuolar proton-transporting V-type ATPase complex  transferrin transport  ion transmembrane transport  ATPase binding  interaction with host  transmembrane transport  extracellular exosome  phagosome maturation  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Phagosome    Synaptic vesicle cycle    Collecting duct acid secretion    Vibrio cholerae infection    Epithelial cell signaling in Helicobacter pylori infection    Rheumatoid arthritis   
NDEx NetworkATP6V1G1
Atlas of Cancer Signalling NetworkATP6V1G1
Wikipedia pathwaysATP6V1G1
Orthology - Evolution
OrthoDB9550
Phylogenetic Trees/Animal Genes : TreeFamATP6V1G1
HOVERGENO75348
HOGENOMO75348
Homologs : HomoloGeneATP6V1G1
Homology/Alignments : Family Browser (UCSC)ATP6V1G1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP6V1G1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP6V1G1
dbVarATP6V1G1
ClinVarATP6V1G1
1000_GenomesATP6V1G1 
Exome Variant ServerATP6V1G1
ExAC (Exome Aggregation Consortium)ATP6V1G1 (select the gene name)
Genetic variants : HAPMAP9550
Genomic Variants (DGV)ATP6V1G1 [DGVbeta]
DECIPHER (Syndromes)9:117349994-117361152  
CONAN: Copy Number AnalysisATP6V1G1 
Mutations
ICGC Data PortalATP6V1G1 
TCGA Data PortalATP6V1G1 
Broad Tumor PortalATP6V1G1
OASIS PortalATP6V1G1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP6V1G1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP6V1G1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP6V1G1
DgiDB (Drug Gene Interaction Database)ATP6V1G1
DoCM (Curated mutations)ATP6V1G1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP6V1G1 (select a term)
intoGenATP6V1G1
Cancer3DATP6V1G1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607296   
Orphanet
MedgenATP6V1G1
Genetic Testing Registry ATP6V1G1
NextProtO75348 [Medical]
TSGene9550
GENETestsATP6V1G1
Huge Navigator ATP6V1G1 [HugePedia]
snp3D : Map Gene to Disease9550
BioCentury BCIQATP6V1G1
ClinGenATP6V1G1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9550
Chemical/Pharm GKB GenePA25163
Clinical trialATP6V1G1
Miscellaneous
canSAR (ICR)ATP6V1G1 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP6V1G1
EVEXATP6V1G1
GoPubMedATP6V1G1
iHOPATP6V1G1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:27 CET 2017

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