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ATP6V1G2-DDX39B (ATP6V1G2-DDX39B readthrough (NMD candidate))

Identity

Other alias-
HGNC (Hugo) ATP6V1G2-DDX39B
LocusID (NCBI) 100532737
Atlas_Id 60649
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31530219 and ends at 31546848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP6V1G2-DDX39B   41999
Cards
Entrez_Gene (NCBI)ATP6V1G2-DDX39B  100532737  ATP6V1G2-DDX39B readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)ATP6V1G2-DDX39B
Ensembl hg19 (Hinxton)ENSG00000254870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254870 [Gene_View]  ENSG00000254870 [Sequence]  chr6:31530219-31546848 [Contig_View]  ATP6V1G2-DDX39B [Vega]
ICGC DataPortalENSG00000254870
TCGA cBioPortalATP6V1G2-DDX39B
AceView (NCBI)ATP6V1G2-DDX39B
Genatlas (Paris)ATP6V1G2-DDX39B
WikiGenes100532737
SOURCE (Princeton)ATP6V1G2-DDX39B
Genetics Home Reference (NIH)ATP6V1G2-DDX39B
Genomic and cartography
GoldenPath hg38 (UCSC)ATP6V1G2-DDX39B  -     chr6:31530219-31546848 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP6V1G2-DDX39B  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblATP6V1G2-DDX39B - 6p21.33 [CytoView hg19]  ATP6V1G2-DDX39B - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIATP6V1G2-DDX39B [Mapview hg19]  ATP6V1G2-DDX39B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC004350
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)ATP6V1G2-DDX39B
Cluster EST : UnigeneHs.254042 [ NCBI ]
CGAP (NCI)Hs.254042
Alternative Splicing GalleryENSG00000254870
Gene ExpressionATP6V1G2-DDX39B [ NCBI-GEO ]   ATP6V1G2-DDX39B [ EBI - ARRAY_EXPRESS ]   ATP6V1G2-DDX39B [ SEEK ]   ATP6V1G2-DDX39B [ MEM ]
Gene Expression Viewer (FireBrowse)ATP6V1G2-DDX39B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100532737
GTEX Portal (Tissue expression)ATP6V1G2-DDX39B
Human Protein AtlasENSG00000254870-ATP6V1G2-DDX39B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP6V1G2-DDX39B
DMDM Disease mutations100532737
Blocks (Seattle)ATP6V1G2-DDX39B
Human Protein Atlas [tissue]ENSG00000254870-ATP6V1G2-DDX39B [tissue]
Protein Interaction databases
FunCoupENSG00000254870
BioGRIDATP6V1G2-DDX39B
STRING (EMBL)ATP6V1G2-DDX39B
ZODIACATP6V1G2-DDX39B
Ontologies - Pathways
Huge Navigator ATP6V1G2-DDX39B [HugePedia]
snp3D : Map Gene to Disease100532737
BioCentury BCIQATP6V1G2-DDX39B
ClinGenATP6V1G2-DDX39B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100532737
Clinical trialATP6V1G2-DDX39B
Miscellaneous
canSAR (ICR)ATP6V1G2-DDX39B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP6V1G2-DDX39B
EVEXATP6V1G2-DDX39B
GoPubMedATP6V1G2-DDX39B
iHOPATP6V1G2-DDX39B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:36:28 CEST 2018

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