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ATP6V1G3 (ATPase H+ transporting V1 subunit G3)

Identity

Alias_namesATPase, H transporting, lysosomal 13kD, V1 subunit G isoform 3
ATPase, H transporting, lysosomal 13kDa, V1 subunit G isoform 3
ATPase, H transporting, lysosomal 13kDa, V1 subunit G3
Alias_symbol (synonym)ATP6G3
Vma10
Other alias
HGNC (Hugo) ATP6V1G3
LocusID (NCBI) 127124
Atlas_Id 51080
Location 1q31.3  [Link to chromosome band 1q31]
Location_base_pair Starts at 198523222 and ends at 198540945 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP6V1G3   18265
Cards
Entrez_Gene (NCBI)ATP6V1G3  127124  ATPase H+ transporting V1 subunit G3
AliasesATP6G3; Vma10
GeneCards (Weizmann)ATP6V1G3
Ensembl hg19 (Hinxton)ENSG00000151418 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151418 [Gene_View]  chr1:198523222-198540945 [Contig_View]  ATP6V1G3 [Vega]
ICGC DataPortalENSG00000151418
TCGA cBioPortalATP6V1G3
AceView (NCBI)ATP6V1G3
Genatlas (Paris)ATP6V1G3
WikiGenes127124
SOURCE (Princeton)ATP6V1G3
Genetics Home Reference (NIH)ATP6V1G3
Genomic and cartography
GoldenPath hg38 (UCSC)ATP6V1G3  -     chr1:198523222-198540945 -  1q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP6V1G3  -     1q31.3   [Description]    (hg19-Feb_2009)
EnsemblATP6V1G3 - 1q31.3 [CytoView hg19]  ATP6V1G3 - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBIATP6V1G3 [Mapview hg19]  ATP6V1G3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY039760 BC101129 BC101130 BC101131 BF509031
RefSeq transcript (Entrez)NM_001320218 NM_133262 NM_133326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP6V1G3
Cluster EST : UnigeneHs.127743 [ NCBI ]
CGAP (NCI)Hs.127743
Alternative Splicing GalleryENSG00000151418
Gene ExpressionATP6V1G3 [ NCBI-GEO ]   ATP6V1G3 [ EBI - ARRAY_EXPRESS ]   ATP6V1G3 [ SEEK ]   ATP6V1G3 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP6V1G3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127124
GTEX Portal (Tissue expression)ATP6V1G3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LB4
Splice isoforms : SwissVarQ96LB4
PhosPhoSitePlusQ96LB4
Domains : Interpro (EBI)V-ATPase_G   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP6V1G3
DMDM Disease mutations127124
Blocks (Seattle)ATP6V1G3
SuperfamilyQ96LB4
Human Protein AtlasENSG00000151418
Peptide AtlasQ96LB4
HPRD16526
IPIIPI00745352   IPI00143888   IPI00064966   
Protein Interaction databases
DIP (DOE-UCLA)Q96LB4
IntAct (EBI)Q96LB4
FunCoupENSG00000151418
BioGRIDATP6V1G3
STRING (EMBL)ATP6V1G3
ZODIACATP6V1G3
Ontologies - Pathways
QuickGOQ96LB4
Ontology : AmiGOcytosol  cytosol  plasma membrane  insulin receptor signaling pathway  hydrogen-exporting ATPase activity, phosphorylative mechanism  vacuolar proton-transporting V-type ATPase complex  transferrin transport  ion transmembrane transport  ATPase binding  phagosome acidification  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytosol  cytosol  plasma membrane  insulin receptor signaling pathway  hydrogen-exporting ATPase activity, phosphorylative mechanism  vacuolar proton-transporting V-type ATPase complex  transferrin transport  ion transmembrane transport  ATPase binding  phagosome acidification  hydrogen ion transmembrane transport  
Pathways : KEGG   
NDEx NetworkATP6V1G3
Atlas of Cancer Signalling NetworkATP6V1G3
Wikipedia pathwaysATP6V1G3
Orthology - Evolution
OrthoDB127124
GeneTree (enSembl)ENSG00000151418
Phylogenetic Trees/Animal Genes : TreeFamATP6V1G3
HOVERGENQ96LB4
HOGENOMQ96LB4
Homologs : HomoloGeneATP6V1G3
Homology/Alignments : Family Browser (UCSC)ATP6V1G3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP6V1G3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP6V1G3
dbVarATP6V1G3
ClinVarATP6V1G3
1000_GenomesATP6V1G3 
Exome Variant ServerATP6V1G3
ExAC (Exome Aggregation Consortium)ATP6V1G3 (select the gene name)
Genetic variants : HAPMAP127124
Genomic Variants (DGV)ATP6V1G3 [DGVbeta]
DECIPHERATP6V1G3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP6V1G3 
Mutations
ICGC Data PortalATP6V1G3 
TCGA Data PortalATP6V1G3 
Broad Tumor PortalATP6V1G3
OASIS PortalATP6V1G3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP6V1G3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP6V1G3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP6V1G3
DgiDB (Drug Gene Interaction Database)ATP6V1G3
DoCM (Curated mutations)ATP6V1G3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP6V1G3 (select a term)
intoGenATP6V1G3
Cancer3DATP6V1G3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP6V1G3
Genetic Testing Registry ATP6V1G3
NextProtQ96LB4 [Medical]
TSGene127124
GENETestsATP6V1G3
Target ValidationATP6V1G3
Huge Navigator ATP6V1G3 [HugePedia]
snp3D : Map Gene to Disease127124
BioCentury BCIQATP6V1G3
ClinGenATP6V1G3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127124
Chemical/Pharm GKB GenePA38515
Clinical trialATP6V1G3
Miscellaneous
canSAR (ICR)ATP6V1G3 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP6V1G3
EVEXATP6V1G3
GoPubMedATP6V1G3
iHOPATP6V1G3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:58 CEST 2017

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