Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATP8A2 (ATPase phospholipid transporting 8A2)

Identity

Alias (NCBI)ATP
ATPIB
CAMRQ4
IB
ML-1
HGNC (Hugo) ATP8A2
HGNC Alias symbATPIB
ML-1
HGNC Previous nameATPase, aminophospholipid transporter-like, Class I, type 8A, member 2
 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
 ATPase, aminophospholipid transporter, class I, type 8A, member 2
LocusID (NCBI) 51761
Atlas_Id 727
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 25371974 and ends at 26025851 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP8A2 (13q12.13) / CRYL1 (13q12.11)ATP8A2 (13q12.13) / FECH (18q21.31)MICU2 (13q12.11) / ATP8A2 (13q12.13)
RNF13 (3q25.1) / ATP8A2 (13q12.13)ATP8A2 13q12.13 / CRYL1 13q12.11EFHA1 ATP8A2 13q12.13
RNF13 3q25.1 / ATP8A2 13q12.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(3;13)(q25;q12) RNF13/ATP8A2
ATP8A2/CRYL1 (13q12)
MICU2/ATP8A2 (13q12)

External links

Nomenclature
HGNC (Hugo)ATP8A2   13533
Cards
Entrez_Gene (NCBI)ATP8A2    ATPase phospholipid transporting 8A2
AliasesATP; ATPIB; CAMRQ4; IB; 
ML-1
GeneCards (Weizmann)ATP8A2
Ensembl hg19 (Hinxton)ENSG00000132932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132932 [Gene_View]  ENSG00000132932 [Sequence]  chr13:25371974-26025851 [Contig_View]  ATP8A2 [Vega]
ICGC DataPortalENSG00000132932
TCGA cBioPortalATP8A2
AceView (NCBI)ATP8A2
Genatlas (Paris)ATP8A2
SOURCE (Princeton)ATP8A2
Genetics Home Reference (NIH)ATP8A2
Genomic and cartography
GoldenPath hg38 (UCSC)ATP8A2  -     chr13:25371974-26025851 +  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP8A2  -     13q12.13   [Description]    (hg19-Feb_2009)
GoldenPathATP8A2 - 13q12.13 [CytoView hg19]  ATP8A2 - 13q12.13 [CytoView hg38]
ImmunoBaseENSG00000132932
genome Data Viewer NCBIATP8A2 [Mapview hg19]  
OMIM605870   615268   
Gene and transcription
Genbank (Entrez)AF236871 AK022096 AK094653 AK126031 AK127263
RefSeq transcript (Entrez)NM_001313741 NM_016529
RefSeq genomic (Entrez)NC_000013 NG_042855 NT_187593
Consensus coding sequences : CCDS (NCBI)ATP8A2
Alternative Splicing GalleryENSG00000132932
Gene ExpressionATP8A2 [ NCBI-GEO ]   ATP8A2 [ EBI - ARRAY_EXPRESS ]   ATP8A2 [ SEEK ]   ATP8A2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP8A2 [ Firebrowse - Broad ]
GenevisibleExpression of ATP8A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51761
GTEX Portal (Tissue expression)ATP8A2
Human Protein AtlasENSG00000132932-ATP8A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTI2
Splice isoforms : SwissVarQ9NTI2
PhosPhoSitePlusQ9NTI2
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATPase_P-typ_cyto_dom_N    ATPase_P-typ_P_site    ATPase_P-typ_TM_dom_sf    ATPase_P-typ_transduc_dom_A_sf    HAD-like_sf    HAD_sf    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam16212    pfam16209   
Conserved Domain (NCBI)ATP8A2
Blocks (Seattle)ATP8A2
SuperfamilyQ9NTI2
Human Protein Atlas [tissue]ENSG00000132932-ATP8A2 [tissue]
Peptide AtlasQ9NTI2
HPRD05795
IPIIPI00939691   IPI01011315   IPI00465166   IPI00477638   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTI2
IntAct (EBI)Q9NTI2
BioGRIDATP8A2
STRING (EMBL)ATP8A2
ZODIACATP8A2
Ontologies - Pathways
QuickGOQ9NTI2
Ontology : AmiGOmagnesium ion binding  photoreceptor outer segment  involuntary skeletal muscle contraction  ATP binding  nucleoplasm  endosome  Golgi apparatus  plasma membrane  plasma membrane  axonogenesis  aging  negative regulation of cell proliferation  retina layer formation  positive regulation of neuron projection development  response to auditory stimulus  aminophospholipid transmembrane transporter activity  integral component of membrane  positive regulation of multicellular organism growth  inner ear morphogenesis  eating behavior  skin development  phospholipid translocation  neuron development  neuromuscular process controlling posture  detection of light stimulus involved in visual perception  neurofilament cytoskeleton organization  positive regulation of phospholipid translocation  
Ontology : EGO-EBImagnesium ion binding  photoreceptor outer segment  involuntary skeletal muscle contraction  ATP binding  nucleoplasm  endosome  Golgi apparatus  plasma membrane  plasma membrane  axonogenesis  aging  negative regulation of cell proliferation  retina layer formation  positive regulation of neuron projection development  response to auditory stimulus  aminophospholipid transmembrane transporter activity  integral component of membrane  positive regulation of multicellular organism growth  inner ear morphogenesis  eating behavior  skin development  phospholipid translocation  neuron development  neuromuscular process controlling posture  detection of light stimulus involved in visual perception  neurofilament cytoskeleton organization  positive regulation of phospholipid translocation  
NDEx NetworkATP8A2
Atlas of Cancer Signalling NetworkATP8A2
Wikipedia pathwaysATP8A2
Orthology - Evolution
OrthoDB51761
GeneTree (enSembl)ENSG00000132932
Phylogenetic Trees/Animal Genes : TreeFamATP8A2
HOGENOMQ9NTI2
Homologs : HomoloGeneATP8A2
Homology/Alignments : Family Browser (UCSC)ATP8A2
Gene fusions - Rearrangements
Fusion : MitelmanATP8A2/CRYL1 [13q12.13/13q12.11]  
Fusion : MitelmanMICU2/ATP8A2 [13q12.11/13q12.13]  
Fusion : MitelmanRNF13/ATP8A2 [3q25.1/13q12.13]  
Fusion PortalATP8A2 13q12.13 CRYL1 13q12.11 OV
Fusion PortalEFHA1 ATP8A2 13q12.13 BRCA
Fusion PortalRNF13 3q25.1 ATP8A2 13q12.13 BRCA
Fusion : QuiverATP8A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP8A2 [hg38]
dbVarATP8A2
ClinVarATP8A2
MonarchATP8A2
1000_GenomesATP8A2 
Exome Variant ServerATP8A2
GNOMAD BrowserENSG00000132932
Varsome BrowserATP8A2
Genomic Variants (DGV)ATP8A2 [DGVbeta]
DECIPHERATP8A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP8A2 
Mutations
ICGC Data PortalATP8A2 
TCGA Data PortalATP8A2 
Broad Tumor PortalATP8A2
OASIS PortalATP8A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP8A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP8A2
Mutations and Diseases : HGMDATP8A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP8A2
DgiDB (Drug Gene Interaction Database)ATP8A2
DoCM (Curated mutations)ATP8A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP8A2 (select a term)
intoGenATP8A2
Cancer3DATP8A2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605870    615268   
Orphanet1777   
DisGeNETATP8A2
MedgenATP8A2
Genetic Testing Registry ATP8A2
NextProtQ9NTI2 [Medical]
GENETestsATP8A2
Target ValidationATP8A2
Huge Navigator ATP8A2 [HugePedia]
ClinGenATP8A2 (curated)
Clinical trials, drugs, therapy
MyCancerGenomeATP8A2
Protein Interactions : CTD
Pharm GKB GenePA25166
PharosQ9NTI2
Clinical trialATP8A2
Miscellaneous
canSAR (ICR)ATP8A2 (select the gene name)
HarmonizomeATP8A2
DataMed IndexATP8A2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATP8A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:06:42 CET 2021
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