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ATP9A (ATPase phospholipid transporting 9A (putative))

Identity

Alias (NCBI)ATPIIA
HGNC (Hugo) ATP9A
HGNC Alias symbKIAA0611
ATPIIA
HGNC Previous nameATPase, class II, type 9A
LocusID (NCBI) 10079
Atlas_Id 52437
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 51596516 and ends at 51768390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP9A (20q13.2) / ARFGEF2 (20q13.13)ATP9A (20q13.2) / ATP9A (20q13.2)ATP9A (20q13.2) / B3GALNT2 (1q42.3)
ATP9A (20q13.2) / MACROD2 (20p12.1)ATP9A (20q13.2) / UQCC1 (20q11.22)CLTA (9p13.3) / ATP9A (20q13.2)
ATP9A 20q13.2 / MACROD2 20p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ATP9A   13540
Cards
Entrez_Gene (NCBI)ATP9A    ATPase phospholipid transporting 9A (putative)
AliasesATPIIA
GeneCards (Weizmann)ATP9A
Ensembl hg19 (Hinxton)ENSG00000054793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054793 [Gene_View]  ENSG00000054793 [Sequence]  chr20:51596516-51768390 [Contig_View]  ATP9A [Vega]
ICGC DataPortalENSG00000054793
TCGA cBioPortalATP9A
AceView (NCBI)ATP9A
Genatlas (Paris)ATP9A
SOURCE (Princeton)ATP9A
Genetics Home Reference (NIH)ATP9A
Genomic and cartography
GoldenPath hg38 (UCSC)ATP9A  -     chr20:51596516-51768390 -  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP9A  -     20q13.2   [Description]    (hg19-Feb_2009)
GoldenPathATP9A - 20q13.2 [CytoView hg19]  ATP9A - 20q13.2 [CytoView hg38]
ImmunoBaseENSG00000054793
Genome Data Viewer NCBIATP9A [Mapview hg19]  
OMIM609126   
Gene and transcription
Genbank (Entrez)AB014511 AF086357 AK025559 AK026513 AK172802
RefSeq transcript (Entrez)NM_006045
Consensus coding sequences : CCDS (NCBI)ATP9A
Gene ExpressionATP9A [ NCBI-GEO ]   ATP9A [ EBI - ARRAY_EXPRESS ]   ATP9A [ SEEK ]   ATP9A [ MEM ]
Gene Expression Viewer (FireBrowse)ATP9A [ Firebrowse - Broad ]
GenevisibleExpression of ATP9A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10079
GTEX Portal (Tissue expression)ATP9A
Human Protein AtlasENSG00000054793-ATP9A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75110   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75110  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75110
Catalytic activity : Enzyme7.6.2.1 [ Enzyme-Expasy ]   7.6.2.17.6.2.1 [ IntEnz-EBI ]   7.6.2.1 [ BRENDA ]   7.6.2.1 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusO75110
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP9A    ATPase_P-typ_cyto_dom_N    ATPase_P-typ_P_site    ATPase_P-typ_TM_dom_sf    ATPase_P-typ_transduc_dom_A_sf    HAD-like_sf    HAD_sf    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam16212    pfam16209   
Conserved Domain (NCBI)ATP9A
SuperfamilyO75110
AlphaFold pdb e-kbO75110   
Human Protein Atlas [tissue]ENSG00000054793-ATP9A [tissue]
HPRD18541
Protein Interaction databases
DIP (DOE-UCLA)O75110
IntAct (EBI)O75110
BioGRIDATP9A
STRING (EMBL)ATP9A
ZODIACATP9A
Ontologies - Pathways
QuickGOO75110
Ontology : AmiGOmagnesium ion binding  protease binding  protein binding  ATP binding  endosome  early endosome  trans-Golgi network  trans-Golgi network  plasma membrane  plasma membrane  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  endocytosis  integral component of membrane  early endosome membrane  trans-Golgi network membrane  phospholipid translocation  phospholipid translocation  perinuclear region of cytoplasm  recycling endosome  recycling endosome membrane  ATPase-coupled intramembrane lipid transporter activity  negative regulation of exosomal secretion  regulation of retrograde transport, endosome to Golgi  regulation of endocytic recycling  
Ontology : EGO-EBImagnesium ion binding  protease binding  protein binding  ATP binding  endosome  early endosome  trans-Golgi network  trans-Golgi network  plasma membrane  plasma membrane  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  endocytosis  integral component of membrane  early endosome membrane  trans-Golgi network membrane  phospholipid translocation  phospholipid translocation  perinuclear region of cytoplasm  recycling endosome  recycling endosome membrane  ATPase-coupled intramembrane lipid transporter activity  negative regulation of exosomal secretion  regulation of retrograde transport, endosome to Golgi  regulation of endocytic recycling  
NDEx NetworkATP9A
Atlas of Cancer Signalling NetworkATP9A
Wikipedia pathwaysATP9A
Orthology - Evolution
OrthoDB10079
GeneTree (enSembl)ENSG00000054793
Phylogenetic Trees/Animal Genes : TreeFamATP9A
Homologs : HomoloGeneATP9A
Homology/Alignments : Family Browser (UCSC)ATP9A
Gene fusions - Rearrangements
Fusion : MitelmanATP9A/ARFGEF2 [20q13.2/20q13.13]  
Fusion : MitelmanATP9A/MACROD2 [20q13.2/20p12.1]  
Fusion : QuiverATP9A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP9A
dbVarATP9A
ClinVarATP9A
MonarchATP9A
1000_GenomesATP9A 
Exome Variant ServerATP9A
GNOMAD BrowserENSG00000054793
Varsome BrowserATP9A
ACMGATP9A variants
VarityO75110
Genomic Variants (DGV)ATP9A [DGVbeta]
DECIPHERATP9A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP9A 
Mutations
ICGC Data PortalATP9A 
TCGA Data PortalATP9A 
Broad Tumor PortalATP9A
OASIS PortalATP9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP9A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP9A
Mutations and Diseases : HGMDATP9A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATP9A
DgiDB (Drug Gene Interaction Database)ATP9A
DoCM (Curated mutations)ATP9A
CIViC (Clinical Interpretations of Variants in Cancer)ATP9A
Cancer3DATP9A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609126   
Orphanet
DisGeNETATP9A
MedgenATP9A
Genetic Testing Registry ATP9A
NextProtO75110 [Medical]
GENETestsATP9A
Target ValidationATP9A
Huge Navigator ATP9A [HugePedia]
ClinGenATP9A
Clinical trials, drugs, therapy
MyCancerGenomeATP9A
Protein Interactions : CTDATP9A
Pharm GKB GenePA25171
PharosO75110
Clinical trialATP9A
Miscellaneous
canSAR (ICR)ATP9A
HarmonizomeATP9A
DataMed IndexATP9A
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATP9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:41 CEST 2021

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