Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATP9A (ATPase phospholipid transporting 9A (putative))

Identity

Alias_namesATPase
Alias_symbol (synonym)KIAA0611
ATPIIA
Other alias
HGNC (Hugo) ATP9A
LocusID (NCBI) 10079
Atlas_Id 52437
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 51596775 and ends at 51768411 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP9A (20q13.2) / ARFGEF2 (20q13.13)ATP9A (20q13.2) / ATP9A (20q13.2)ATP9A (20q13.2) / B3GALNT2 (1q42.3)
ATP9A (20q13.2) / MACROD2 (20p12.1)ATP9A (20q13.2) / UQCC1 (20q11.22)CLTA (9p13.3) / ATP9A (20q13.2)
ATP9A 20q13.2 / MACROD2 20p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP9A   13540
Cards
Entrez_Gene (NCBI)ATP9A  10079  ATPase phospholipid transporting 9A (putative)
AliasesATPIIA
GeneCards (Weizmann)ATP9A
Ensembl hg19 (Hinxton)ENSG00000054793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054793 [Gene_View]  chr20:51596775-51768411 [Contig_View]  ATP9A [Vega]
ICGC DataPortalENSG00000054793
TCGA cBioPortalATP9A
AceView (NCBI)ATP9A
Genatlas (Paris)ATP9A
WikiGenes10079
SOURCE (Princeton)ATP9A
Genetics Home Reference (NIH)ATP9A
Genomic and cartography
GoldenPath hg38 (UCSC)ATP9A  -     chr20:51596775-51768411 -  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP9A  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblATP9A - 20q13.2 [CytoView hg19]  ATP9A - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBIATP9A [Mapview hg19]  ATP9A [Mapview hg38]
OMIM609126   
Gene and transcription
Genbank (Entrez)AB014511 AF086357 AK025559 AK026513 AK172802
RefSeq transcript (Entrez)NM_006045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP9A
Cluster EST : UnigeneHs.649234 [ NCBI ]
CGAP (NCI)Hs.649234
Alternative Splicing GalleryENSG00000054793
Gene ExpressionATP9A [ NCBI-GEO ]   ATP9A [ EBI - ARRAY_EXPRESS ]   ATP9A [ SEEK ]   ATP9A [ MEM ]
Gene Expression Viewer (FireBrowse)ATP9A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10079
GTEX Portal (Tissue expression)ATP9A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75110   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75110  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75110
Splice isoforms : SwissVarO75110
Catalytic activity : Enzyme3.6.3.1 [ Enzyme-Expasy ]   3.6.3.13.6.3.1 [ IntEnz-EBI ]   3.6.3.1 [ BRENDA ]   3.6.3.1 [ KEGG ]   
PhosPhoSitePlusO75110
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP9A    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)E1-E2_ATPase (PF00122)    PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam00122    pfam16212    pfam16209   
Conserved Domain (NCBI)ATP9A
DMDM Disease mutations10079
Blocks (Seattle)ATP9A
SuperfamilyO75110
Human Protein AtlasENSG00000054793
Peptide AtlasO75110
HPRD18541
IPIIPI00024368   IPI00220239   IPI00739057   
Protein Interaction databases
DIP (DOE-UCLA)O75110
IntAct (EBI)O75110
FunCoupENSG00000054793
BioGRIDATP9A
STRING (EMBL)ATP9A
ZODIACATP9A
Ontologies - Pathways
QuickGOO75110
Ontology : AmiGOmagnesium ion binding  phospholipid-translocating ATPase activity  ATP binding  early endosome  trans-Golgi network  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  endocytosis  integral component of membrane  early endosome membrane  phospholipid translocation  perinuclear region of cytoplasm  recycling endosome  
Ontology : EGO-EBImagnesium ion binding  phospholipid-translocating ATPase activity  ATP binding  early endosome  trans-Golgi network  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  endocytosis  integral component of membrane  early endosome membrane  phospholipid translocation  perinuclear region of cytoplasm  recycling endosome  
NDEx NetworkATP9A
Atlas of Cancer Signalling NetworkATP9A
Wikipedia pathwaysATP9A
Orthology - Evolution
OrthoDB10079
GeneTree (enSembl)ENSG00000054793
Phylogenetic Trees/Animal Genes : TreeFamATP9A
HOVERGENO75110
HOGENOMO75110
Homologs : HomoloGeneATP9A
Homology/Alignments : Family Browser (UCSC)ATP9A
Gene fusions - Rearrangements
Fusion : MitelmanATP9A/ARFGEF2 [20q13.2/20q13.13]  
Fusion : MitelmanATP9A/MACROD2 [20q13.2/20p12.1]  [t(20;20)(p12;q13)]  
Fusion: TCGAATP9A 20q13.2 MACROD2 20p12.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP9A
dbVarATP9A
ClinVarATP9A
1000_GenomesATP9A 
Exome Variant ServerATP9A
ExAC (Exome Aggregation Consortium)ATP9A (select the gene name)
Genetic variants : HAPMAP10079
Genomic Variants (DGV)ATP9A [DGVbeta]
DECIPHERATP9A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP9A 
Mutations
ICGC Data PortalATP9A 
TCGA Data PortalATP9A 
Broad Tumor PortalATP9A
OASIS PortalATP9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP9A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP9A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP9A
DgiDB (Drug Gene Interaction Database)ATP9A
DoCM (Curated mutations)ATP9A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP9A (select a term)
intoGenATP9A
Cancer3DATP9A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609126   
Orphanet
MedgenATP9A
Genetic Testing Registry ATP9A
NextProtO75110 [Medical]
TSGene10079
GENETestsATP9A
Target ValidationATP9A
Huge Navigator ATP9A [HugePedia]
snp3D : Map Gene to Disease10079
BioCentury BCIQATP9A
ClinGenATP9A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10079
Chemical/Pharm GKB GenePA25171
Clinical trialATP9A
Miscellaneous
canSAR (ICR)ATP9A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP9A
EVEXATP9A
GoPubMedATP9A
iHOPATP9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:25:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.