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ATP9B (ATPase phospholipid transporting 9B (putative))

Identity

Alias_namesATPase
Alias_symbol (synonym)ATPIIB
Other aliasATPASEP
HUSSY-20
NEO1L
hMMR1
HGNC (Hugo) ATP9B
LocusID (NCBI) 374868
Atlas_Id 52429
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 79069275 and ends at 79378282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP9B (18q23) / ATP9B (18q23)ATP9B (18q23) / STK10 (5q35.1)ATP9B (18q23) / ZNF516 (18q23)
BCL3 (19q13.32) / ATP9B (18q23)BCL3 19q13.32 / ATP9B 18q23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP9B   13541
Cards
Entrez_Gene (NCBI)ATP9B  374868  ATPase phospholipid transporting 9B (putative)
AliasesATPASEP; ATPIIB; HUSSY-20; NEO1L; 
hMMR1
GeneCards (Weizmann)ATP9B
Ensembl hg19 (Hinxton)ENSG00000166377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166377 [Gene_View]  chr18:79069275-79378282 [Contig_View]  ATP9B [Vega]
ICGC DataPortalENSG00000166377
TCGA cBioPortalATP9B
AceView (NCBI)ATP9B
Genatlas (Paris)ATP9B
WikiGenes374868
SOURCE (Princeton)ATP9B
Genetics Home Reference (NIH)ATP9B
Genomic and cartography
GoldenPath hg38 (UCSC)ATP9B  -     chr18:79069275-79378282 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP9B  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblATP9B - 18q23 [CytoView hg19]  ATP9B - 18q23 [CytoView hg38]
Mapping of homologs : NCBIATP9B [Mapview hg19]  ATP9B [Mapview hg38]
OMIM614446   
Gene and transcription
Genbank (Entrez)AB373110 AJ006268 AK093704 AK097757 AK127634
RefSeq transcript (Entrez)NM_001306085 NM_198531
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_187666 NW_003315961
Consensus coding sequences : CCDS (NCBI)ATP9B
Cluster EST : UnigeneHs.465475 [ NCBI ]
CGAP (NCI)Hs.465475
Alternative Splicing GalleryENSG00000166377
Gene ExpressionATP9B [ NCBI-GEO ]   ATP9B [ EBI - ARRAY_EXPRESS ]   ATP9B [ SEEK ]   ATP9B [ MEM ]
Gene Expression Viewer (FireBrowse)ATP9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374868
GTEX Portal (Tissue expression)ATP9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43861   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43861  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43861
Splice isoforms : SwissVarO43861
Catalytic activity : Enzyme3.6.3.1 [ Enzyme-Expasy ]   3.6.3.13.6.3.1 [ IntEnz-EBI ]   3.6.3.1 [ BRENDA ]   3.6.3.1 [ KEGG ]   
PhosPhoSitePlusO43861
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP9B    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)E1-E2_ATPase (PF00122)    PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam00122    pfam16212    pfam16209   
Conserved Domain (NCBI)ATP9B
DMDM Disease mutations374868
Blocks (Seattle)ATP9B
SuperfamilyO43861
Human Protein AtlasENSG00000166377
Peptide AtlasO43861
HPRD16528
IPIIPI00396022   IPI00479667   IPI00874118   IPI00902910   IPI00384996   IPI01010976   IPI00442422   IPI00442551   IPI00443388   IPI01011419   IPI00443934   IPI00985333   
Protein Interaction databases
DIP (DOE-UCLA)O43861
IntAct (EBI)O43861
FunCoupENSG00000166377
BioGRIDATP9B
STRING (EMBL)ATP9B
ZODIACATP9B
Ontologies - Pathways
QuickGOO43861
Ontology : AmiGOmagnesium ion binding  phospholipid-translocating ATPase activity  ATP binding  endosome  trans-Golgi network  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  endocytosis  integral component of membrane  phospholipid translocation  perinuclear region of cytoplasm  establishment of protein localization to Golgi  
Ontology : EGO-EBImagnesium ion binding  phospholipid-translocating ATPase activity  ATP binding  endosome  trans-Golgi network  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  endocytosis  integral component of membrane  phospholipid translocation  perinuclear region of cytoplasm  establishment of protein localization to Golgi  
NDEx NetworkATP9B
Atlas of Cancer Signalling NetworkATP9B
Wikipedia pathwaysATP9B
Orthology - Evolution
OrthoDB374868
GeneTree (enSembl)ENSG00000166377
Phylogenetic Trees/Animal Genes : TreeFamATP9B
HOVERGENO43861
HOGENOMO43861
Homologs : HomoloGeneATP9B
Homology/Alignments : Family Browser (UCSC)ATP9B
Gene fusions - Rearrangements
Fusion : MitelmanBCL3/ATP9B [19q13.32/18q23]  [t(18;19)(q23;q13)]  
Fusion: TCGABCL3 19q13.32 ATP9B 18q23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP9B
dbVarATP9B
ClinVarATP9B
1000_GenomesATP9B 
Exome Variant ServerATP9B
ExAC (Exome Aggregation Consortium)ATP9B (select the gene name)
Genetic variants : HAPMAP374868
Genomic Variants (DGV)ATP9B [DGVbeta]
DECIPHERATP9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP9B 
Mutations
ICGC Data PortalATP9B 
TCGA Data PortalATP9B 
Broad Tumor PortalATP9B
OASIS PortalATP9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP9B
DgiDB (Drug Gene Interaction Database)ATP9B
DoCM (Curated mutations)ATP9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP9B (select a term)
intoGenATP9B
Cancer3DATP9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614446   
Orphanet
MedgenATP9B
Genetic Testing Registry ATP9B
NextProtO43861 [Medical]
TSGene374868
GENETestsATP9B
Huge Navigator ATP9B [HugePedia]
snp3D : Map Gene to Disease374868
BioCentury BCIQATP9B
ClinGenATP9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374868
Chemical/Pharm GKB GenePA25172
Clinical trialATP9B
Miscellaneous
canSAR (ICR)ATP9B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP9B
EVEXATP9B
GoPubMedATP9B
iHOPATP9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:07:16 CEST 2017

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