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ATPSCKMT (family with sequence similarity 173 member B)

Identity

Alias_namesfamily with sequence similarity 173
Other aliasJS-2
hFAM173B
HGNC (Hugo) ATPSCKMT
LocusID (NCBI) 134145
Atlas_Id 52709
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10225508 and ends at 10249909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATPSCKMT   27029
Cards
Entrez_Gene (NCBI)ATPSCKMT  134145  family with sequence similarity 173 member B
AliasesJS-2; hFAM173B
GeneCards (Weizmann)ATPSCKMT
Ensembl hg19 (Hinxton)ENSG00000150756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150756 [Gene_View]  ENSG00000150756 [Sequence]  chr5:10225508-10249909 [Contig_View]  ATPSCKMT [Vega]
ICGC DataPortalENSG00000150756
TCGA cBioPortalATPSCKMT
AceView (NCBI)ATPSCKMT
Genatlas (Paris)ATPSCKMT
WikiGenes134145
SOURCE (Princeton)ATPSCKMT
Genetics Home Reference (NIH)ATPSCKMT
Genomic and cartography
GoldenPath hg38 (UCSC)ATPSCKMT  -     chr5:10225508-10249909 -  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATPSCKMT  -     5p15.2   [Description]    (hg19-Feb_2009)
GoldenPathATPSCKMT - 5p15.2 [CytoView hg19]  ATPSCKMT - 5p15.2 [CytoView hg38]
ImmunoBaseENSG00000150756
Mapping of homologs : NCBIATPSCKMT [Mapview hg19]  ATPSCKMT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA856750 AK000674 AK055604 AK123462 AK300042
RefSeq transcript (Entrez)NM_001258388 NM_001258389 NM_199133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATPSCKMT
Cluster EST : UnigeneHs.481569 [ NCBI ]
CGAP (NCI)Hs.481569
Alternative Splicing GalleryENSG00000150756
Gene ExpressionATPSCKMT [ NCBI-GEO ]   ATPSCKMT [ EBI - ARRAY_EXPRESS ]   ATPSCKMT [ SEEK ]   ATPSCKMT [ MEM ]
Gene Expression Viewer (FireBrowse)ATPSCKMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134145
GTEX Portal (Tissue expression)ATPSCKMT
Human Protein AtlasENSG00000150756-ATPSCKMT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4H8
Splice isoforms : SwissVarQ6P4H8
PhosPhoSitePlusQ6P4H8
Domains : Interpro (EBI)SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATPSCKMT
DMDM Disease mutations134145
Blocks (Seattle)ATPSCKMT
SuperfamilyQ6P4H8
Human Protein Atlas [tissue]ENSG00000150756-ATPSCKMT [tissue]
Peptide AtlasQ6P4H8
HPRD14054
IPIIPI00395800   IPI00967910   IPI00967361   IPI00968143   IPI00964197   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4H8
IntAct (EBI)Q6P4H8
FunCoupENSG00000150756
BioGRIDATPSCKMT
STRING (EMBL)ATPSCKMT
ZODIACATPSCKMT
Ontologies - Pathways
QuickGOQ6P4H8
Ontology : AmiGOintegral component of membrane  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  mitochondrial crista  positive regulation of sensory perception of pain  
Ontology : EGO-EBIintegral component of membrane  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  mitochondrial crista  positive regulation of sensory perception of pain  
NDEx NetworkATPSCKMT
Atlas of Cancer Signalling NetworkATPSCKMT
Wikipedia pathwaysATPSCKMT
Orthology - Evolution
OrthoDB134145
GeneTree (enSembl)ENSG00000150756
Phylogenetic Trees/Animal Genes : TreeFamATPSCKMT
HOGENOMQ6P4H8
Homologs : HomoloGeneATPSCKMT
Homology/Alignments : Family Browser (UCSC)ATPSCKMT
Gene fusions - Rearrangements
Fusion : QuiverATPSCKMT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATPSCKMT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATPSCKMT
dbVarATPSCKMT
ClinVarATPSCKMT
1000_GenomesATPSCKMT 
Exome Variant ServerATPSCKMT
ExAC (Exome Aggregation Consortium)ENSG00000150756
GNOMAD BrowserENSG00000150756
Varsome BrowserATPSCKMT
Genetic variants : HAPMAP134145
Genomic Variants (DGV)ATPSCKMT [DGVbeta]
DECIPHERATPSCKMT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATPSCKMT 
Mutations
ICGC Data PortalATPSCKMT 
TCGA Data PortalATPSCKMT 
Broad Tumor PortalATPSCKMT
OASIS PortalATPSCKMT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATPSCKMT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATPSCKMT
DgiDB (Drug Gene Interaction Database)ATPSCKMT
DoCM (Curated mutations)ATPSCKMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATPSCKMT (select a term)
intoGenATPSCKMT
Cancer3DATPSCKMT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETATPSCKMT
MedgenATPSCKMT
Genetic Testing Registry ATPSCKMT
NextProtQ6P4H8 [Medical]
TSGene134145
GENETestsATPSCKMT
Target ValidationATPSCKMT
Huge Navigator ATPSCKMT [HugePedia]
snp3D : Map Gene to Disease134145
BioCentury BCIQATPSCKMT
ClinGenATPSCKMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134145
Chemical/Pharm GKB GenePA162387281
Clinical trialATPSCKMT
Miscellaneous
canSAR (ICR)ATPSCKMT (select the gene name)
DataMed IndexATPSCKMT
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATPSCKMT
EVEXATPSCKMT
GoPubMedATPSCKMT
iHOPATPSCKMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 8 11:11:46 CEST 2019

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