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ATRAID (all-trans retinoic acid induced differentiation factor)

Identity

Alias_namesC2orf28
chromosome 2 open reading frame 28
Alias_symbol (synonym)HSPC013
p18
APR3
Other aliasAPR--3
APR-3
PRO240
HGNC (Hugo) ATRAID
LocusID (NCBI) 51374
Atlas_Id 53252
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27212351 and ends at 27217178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPR107 (9q34.11) / ATRAID (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATRAID   24090
Cards
Entrez_Gene (NCBI)ATRAID  51374  all-trans retinoic acid induced differentiation factor
AliasesAPR--3; APR-3; APR3; C2orf28; 
HSPC013; PRO240; p18
GeneCards (Weizmann)ATRAID
Ensembl hg19 (Hinxton)ENSG00000138085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138085 [Gene_View]  chr2:27212351-27217178 [Contig_View]  ATRAID [Vega]
ICGC DataPortalENSG00000138085
TCGA cBioPortalATRAID
AceView (NCBI)ATRAID
Genatlas (Paris)ATRAID
WikiGenes51374
SOURCE (Princeton)ATRAID
Genetics Home Reference (NIH)ATRAID
Genomic and cartography
GoldenPath hg38 (UCSC)ATRAID  -     chr2:27212351-27217178 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRAID  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblATRAID - 2p23.3 [CytoView hg19]  ATRAID - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIATRAID [Mapview hg19]  ATRAID [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA604432 AB009017 AF077037 AF144055 AF275744
RefSeq transcript (Entrez)NM_001170795 NM_016085 NM_080592
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATRAID
Cluster EST : UnigeneHs.9527 [ NCBI ]
CGAP (NCI)Hs.9527
Alternative Splicing GalleryENSG00000138085
Gene ExpressionATRAID [ NCBI-GEO ]   ATRAID [ EBI - ARRAY_EXPRESS ]   ATRAID [ SEEK ]   ATRAID [ MEM ]
Gene Expression Viewer (FireBrowse)ATRAID [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51374
GTEX Portal (Tissue expression)ATRAID
Human Protein AtlasENSG00000138085-ATRAID [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UW56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UW56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UW56
Splice isoforms : SwissVarQ6UW56
PhosPhoSitePlusQ6UW56
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATRAID
DMDM Disease mutations51374
Blocks (Seattle)ATRAID
SuperfamilyQ6UW56
Human Protein Atlas [tissue]ENSG00000138085-ATRAID [tissue]
Peptide AtlasQ6UW56
HPRD16652
IPIIPI00412376   IPI00335629   IPI00930484   IPI00892748   
Protein Interaction databases
DIP (DOE-UCLA)Q6UW56
IntAct (EBI)Q6UW56
FunCoupENSG00000138085
BioGRIDATRAID
STRING (EMBL)ATRAID
ZODIACATRAID
Ontologies - Pathways
QuickGOQ6UW56
Ontology : AmiGOmolecular_function  protein binding  nuclear envelope  lysosomal membrane  plasma membrane  regulation of gene expression  integral component of membrane  cell differentiation  positive regulation of bone mineralization  negative regulation of osteoblast proliferation  positive regulation of osteoblast differentiation  perinuclear region of cytoplasm  negative regulation of cellular protein catabolic process  
Ontology : EGO-EBImolecular_function  protein binding  nuclear envelope  lysosomal membrane  plasma membrane  regulation of gene expression  integral component of membrane  cell differentiation  positive regulation of bone mineralization  negative regulation of osteoblast proliferation  positive regulation of osteoblast differentiation  perinuclear region of cytoplasm  negative regulation of cellular protein catabolic process  
NDEx NetworkATRAID
Atlas of Cancer Signalling NetworkATRAID
Wikipedia pathwaysATRAID
Orthology - Evolution
OrthoDB51374
GeneTree (enSembl)ENSG00000138085
Phylogenetic Trees/Animal Genes : TreeFamATRAID
HOVERGENQ6UW56
HOGENOMQ6UW56
Homologs : HomoloGeneATRAID
Homology/Alignments : Family Browser (UCSC)ATRAID
Gene fusions - Rearrangements
Fusion : MitelmanGPR107/ATRAID [9q34.11/2p23.3]  [t(2;9)(p23;q34)]  
Tumor Fusion PortalATRAID
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATRAID [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATRAID
dbVarATRAID
ClinVarATRAID
1000_GenomesATRAID 
Exome Variant ServerATRAID
ExAC (Exome Aggregation Consortium)ENSG00000138085
GNOMAD BrowserENSG00000138085
Genetic variants : HAPMAP51374
Genomic Variants (DGV)ATRAID [DGVbeta]
DECIPHERATRAID [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATRAID 
Mutations
ICGC Data PortalATRAID 
TCGA Data PortalATRAID 
Broad Tumor PortalATRAID
OASIS PortalATRAID [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATRAID
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATRAID
DgiDB (Drug Gene Interaction Database)ATRAID
DoCM (Curated mutations)ATRAID (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATRAID (select a term)
intoGenATRAID
Cancer3DATRAID(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETATRAID
MedgenATRAID
Genetic Testing Registry ATRAID
NextProtQ6UW56 [Medical]
TSGene51374
GENETestsATRAID
Target ValidationATRAID
Huge Navigator ATRAID [HugePedia]
snp3D : Map Gene to Disease51374
BioCentury BCIQATRAID
ClinGenATRAID
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51374
Chemical/Pharm GKB GenePA134964154
Clinical trialATRAID
Miscellaneous
canSAR (ICR)ATRAID (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATRAID
EVEXATRAID
GoPubMedATRAID
iHOPATRAID
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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