Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATRIP-TREX1 (ATRIP-TREX1 readthrough)

Identity

Alias (NCBI)-
HGNC (Hugo) -
LocusID (NCBI) 111822955
Atlas_Id 80569
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48446779 and ends at 48467645 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)ATRIP-TREX1  111822955  ATRIP-TREX1 readthrough
Aliases
GeneCards (Weizmann)ATRIP-TREX1
Ensembl hg19 (Hinxton)ENSG00000164053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164053 [Gene_View]  ENSG00000164053 [Sequence]  chr3:48446779-48467645 [Contig_View]  ATRIP-TREX1 [Vega]
ICGC DataPortalENSG00000164053
TCGA cBioPortalATRIP-TREX1
AceView (NCBI)ATRIP-TREX1
Genatlas (Paris)ATRIP-TREX1
WikiGenes111822955
SOURCE (Princeton)ATRIP-TREX1
Genetics Home Reference (NIH)ATRIP-TREX1
Genomic and cartography
GoldenPath hg38 (UCSC)ATRIP-TREX1  -     chr3:48446779-48467645 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRIP-TREX1  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathATRIP-TREX1 - 3p21.31 [CytoView hg19]  ATRIP-TREX1 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000164053
genome Data Viewer NCBIATRIP-TREX1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATRIP-TREX1
Alternative Splicing GalleryENSG00000164053
Gene ExpressionATRIP-TREX1 [ NCBI-GEO ]   ATRIP-TREX1 [ EBI - ARRAY_EXPRESS ]   ATRIP-TREX1 [ SEEK ]   ATRIP-TREX1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATRIP-TREX1 [ Firebrowse - Broad ]
GenevisibleExpression of ATRIP-TREX1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)111822955
GTEX Portal (Tissue expression)ATRIP-TREX1
Human Protein AtlasENSG00000164053-ATRIP-TREX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATRIP-TREX1
DMDM Disease mutations111822955
Blocks (Seattle)ATRIP-TREX1
Human Protein Atlas [tissue]ENSG00000164053-ATRIP-TREX1 [tissue]
Protein Interaction databases
FunCoupENSG00000164053
BioGRIDATRIP-TREX1
STRING (EMBL)ATRIP-TREX1
ZODIACATRIP-TREX1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease111822955
BioCentury BCIQATRIP-TREX1
ClinGenATRIP-TREX1
Clinical trials, drugs, therapy
Protein Interactions : CTD111822955
Clinical trialATRIP-TREX1
Miscellaneous
canSAR (ICR)ATRIP-TREX1 (select the gene name)
HarmonizomeATRIP-TREX1
DataMed IndexATRIP-TREX1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATRIP-TREX1
EVEXATRIP-TREX1
GoPubMedATRIP-TREX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:06:19 CEST 2020

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