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ATRN (attractin)

Identity

Alias_symbol (synonym)DPPT-L
MGCA
Other alias
HGNC (Hugo) ATRN
LocusID (NCBI) 8455
Atlas_Id 60653
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3471018 and ends at 3616044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATRN (20p13) / GIGYF2 (2q37.1)ATRN (20p13) / NPIPA1 (16p13.11)ATRN (20p13) / RNF24 (20p13)
ESYT2 (7q36.3) / ATRN (20p13)NET1 (10p15.1) / ATRN (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATRN   885
Cards
Entrez_Gene (NCBI)ATRN  8455  attractin
AliasesDPPT-L; MGCA
GeneCards (Weizmann)ATRN
Ensembl hg19 (Hinxton)ENSG00000088812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088812 [Gene_View]  chr20:3471018-3616044 [Contig_View]  ATRN [Vega]
ICGC DataPortalENSG00000088812
TCGA cBioPortalATRN
AceView (NCBI)ATRN
Genatlas (Paris)ATRN
WikiGenes8455
SOURCE (Princeton)ATRN
Genetics Home Reference (NIH)ATRN
Genomic and cartography
GoldenPath hg38 (UCSC)ATRN  -     chr20:3471018-3616044 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRN  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblATRN - 20p13 [CytoView hg19]  ATRN - 20p13 [CytoView hg38]
Mapping of homologs : NCBIATRN [Mapview hg19]  ATRN [Mapview hg38]
OMIM603130   
Gene and transcription
Genbank (Entrez)AA771958 AB011120 AF106861 AK000356 AK293010
RefSeq transcript (Entrez)NM_001207047 NM_001323332 NM_012070 NM_139321 NM_139322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATRN
Cluster EST : UnigeneHs.276252 [ NCBI ]
CGAP (NCI)Hs.276252
Alternative Splicing GalleryENSG00000088812
Gene ExpressionATRN [ NCBI-GEO ]   ATRN [ EBI - ARRAY_EXPRESS ]   ATRN [ SEEK ]   ATRN [ MEM ]
Gene Expression Viewer (FireBrowse)ATRN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8455
GTEX Portal (Tissue expression)ATRN
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75882   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75882  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75882
Splice isoforms : SwissVarO75882
PhosPhoSitePlusO75882
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)    CUB (PS01180)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)   
Domains : Interpro (EBI)Attractin-like_CTLD    C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    CUB_dom    EGF-like_CS    EGF-like_dom    Gal_Oxase/kelch_b-propeller    Kelch-typ_b-propeller    Kelch_1    Laminin_EGF    Plexin_repeat    PSI   
Domain families : Pfam (Sanger)CUB (PF00431)    Kelch_1 (PF01344)    Lectin_C (PF00059)    PSI (PF01437)   
Domain families : Pfam (NCBI)pfam00431    pfam01344    pfam00059    pfam01437   
Domain families : Smart (EMBL)CLECT (SM00034)  CUB (SM00042)  EGF (SM00181)  EGF_Lam (SM00180)  PSI (SM00423)  
Conserved Domain (NCBI)ATRN
DMDM Disease mutations8455
Blocks (Seattle)ATRN
SuperfamilyO75882
Human Protein AtlasENSG00000088812
Peptide AtlasO75882
HPRD04388
IPIIPI00027235   IPI00162735   IPI00939169   IPI00816518   
Protein Interaction databases
DIP (DOE-UCLA)O75882
IntAct (EBI)O75882
FunCoupENSG00000088812
BioGRIDATRN
STRING (EMBL)ATRN
ZODIACATRN
Ontologies - Pathways
QuickGOO75882
Ontology : AmiGOreceptor activity  extracellular space  cytoplasm  plasma membrane  integral component of plasma membrane  inflammatory response  response to oxidative stress  cerebellum development  carbohydrate binding  regulation of multicellular organism growth  myelination  pigmentation  extracellular exosome  
Ontology : EGO-EBIreceptor activity  extracellular space  cytoplasm  plasma membrane  integral component of plasma membrane  inflammatory response  response to oxidative stress  cerebellum development  carbohydrate binding  regulation of multicellular organism growth  myelination  pigmentation  extracellular exosome  
NDEx NetworkATRN
Atlas of Cancer Signalling NetworkATRN
Wikipedia pathwaysATRN
Orthology - Evolution
OrthoDB8455
GeneTree (enSembl)ENSG00000088812
Phylogenetic Trees/Animal Genes : TreeFamATRN
HOVERGENO75882
HOGENOMO75882
Homologs : HomoloGeneATRN
Homology/Alignments : Family Browser (UCSC)ATRN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATRN
dbVarATRN
ClinVarATRN
1000_GenomesATRN 
Exome Variant ServerATRN
ExAC (Exome Aggregation Consortium)ATRN (select the gene name)
Genetic variants : HAPMAP8455
Genomic Variants (DGV)ATRN [DGVbeta]
DECIPHERATRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATRN 
Mutations
ICGC Data PortalATRN 
TCGA Data PortalATRN 
Broad Tumor PortalATRN
OASIS PortalATRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATRN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATRN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATRN
DgiDB (Drug Gene Interaction Database)ATRN
DoCM (Curated mutations)ATRN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATRN (select a term)
intoGenATRN
Cancer3DATRN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603130   
Orphanet
MedgenATRN
Genetic Testing Registry ATRN
NextProtO75882 [Medical]
TSGene8455
GENETestsATRN
Target ValidationATRN
Huge Navigator ATRN [HugePedia]
snp3D : Map Gene to Disease8455
BioCentury BCIQATRN
ClinGenATRN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8455
Chemical/Pharm GKB GenePA25178
Clinical trialATRN
Miscellaneous
canSAR (ICR)ATRN (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATRN
EVEXATRN
GoPubMedATRN
iHOPATRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:05 CEST 2017

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