Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATRNL1 (attractin like 1)

Identity

Alias_namesattractin-like 1
Alias_symbol (synonym)KIAA0534
FLJ45344
ALP
Other aliasbA338L11.1
bA454H24.1
HGNC (Hugo) ATRNL1
LocusID (NCBI) 26033
Atlas_Id 60654
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 115093365 and ends at 115171370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATRNL1 (10q25.3) / ATAD1 (10q23.31)CRYL1 (13q12.11) / ATRNL1 (10q25.3)IQGAP2 (5q13.3) / ATRNL1 (10q25.3)
LOC151009 () / ATRNL1 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(5;10)(q13;q25) IQGAP2/ATRNL1
t(10;10)(q23;q25) ATRNL1/ATAD1

External links

Nomenclature
HGNC (Hugo)ATRNL1   29063
Cards
Entrez_Gene (NCBI)ATRNL1  26033  attractin like 1
AliasesALP; bA338L11.1; bA454H24.1
GeneCards (Weizmann)ATRNL1
Ensembl hg19 (Hinxton)ENSG00000107518 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107518 [Gene_View]  chr10:115093365-115171370 [Contig_View]  ATRNL1 [Vega]
ICGC DataPortalENSG00000107518
TCGA cBioPortalATRNL1
AceView (NCBI)ATRNL1
Genatlas (Paris)ATRNL1
WikiGenes26033
SOURCE (Princeton)ATRNL1
Genetics Home Reference (NIH)ATRNL1
Genomic and cartography
GoldenPath hg38 (UCSC)ATRNL1  -     chr10:115093365-115171370 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRNL1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblATRNL1 - 10q25.3 [CytoView hg19]  ATRNL1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIATRNL1 [Mapview hg19]  ATRNL1 [Mapview hg38]
OMIM612869   
Gene and transcription
Genbank (Entrez)AB011106 AK127277 AK294917 AK299592 AW190029
RefSeq transcript (Entrez)NM_001276282 NM_207303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATRNL1
Cluster EST : UnigeneHs.501127 [ NCBI ]
CGAP (NCI)Hs.501127
Alternative Splicing GalleryENSG00000107518
Gene ExpressionATRNL1 [ NCBI-GEO ]   ATRNL1 [ EBI - ARRAY_EXPRESS ]   ATRNL1 [ SEEK ]   ATRNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATRNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26033
GTEX Portal (Tissue expression)ATRNL1
Human Protein AtlasENSG00000107518-ATRNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV63
Splice isoforms : SwissVarQ5VV63
PhosPhoSitePlusQ5VV63
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)    CUB (PS01180)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)   
Domains : Interpro (EBI)Attractin-like_CTLD    C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    CUB_dom    EGF-like_CS    EGF-like_dom    EGF_extracell    Kelch-typ_b-propeller    Kelch_1    Laminin_EGF    Plexin_repeat    PSI   
Domain families : Pfam (Sanger)CUB (PF00431)    EGF_2 (PF07974)    Kelch_1 (PF01344)    Lectin_C (PF00059)    PSI (PF01437)   
Domain families : Pfam (NCBI)pfam00431    pfam07974    pfam01344    pfam00059    pfam01437   
Domain families : Smart (EMBL)CLECT (SM00034)  CUB (SM00042)  EGF (SM00181)  EGF_Lam (SM00180)  PSI (SM00423)  
Conserved Domain (NCBI)ATRNL1
DMDM Disease mutations26033
Blocks (Seattle)ATRNL1
SuperfamilyQ5VV63
Human Protein Atlas [tissue]ENSG00000107518-ATRNL1 [tissue]
Peptide AtlasQ5VV63
HPRD12504
IPIIPI00749514   IPI00297233   IPI00909257   IPI00909802   IPI00644086   IPI00985389   IPI00975591   IPI01012739   
Protein Interaction databases
DIP (DOE-UCLA)Q5VV63
IntAct (EBI)Q5VV63
FunCoupENSG00000107518
BioGRIDATRNL1
STRING (EMBL)ATRNL1
ZODIACATRNL1
Ontologies - Pathways
QuickGOQ5VV63
Ontology : AmiGOG-protein coupled receptor signaling pathway  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBIG-protein coupled receptor signaling pathway  integral component of membrane  carbohydrate binding  
NDEx NetworkATRNL1
Atlas of Cancer Signalling NetworkATRNL1
Wikipedia pathwaysATRNL1
Orthology - Evolution
OrthoDB26033
GeneTree (enSembl)ENSG00000107518
Phylogenetic Trees/Animal Genes : TreeFamATRNL1
HOVERGENQ5VV63
HOGENOMQ5VV63
Homologs : HomoloGeneATRNL1
Homology/Alignments : Family Browser (UCSC)ATRNL1
Gene fusions - Rearrangements
Fusion : QuiverATRNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATRNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATRNL1
dbVarATRNL1
ClinVarATRNL1
1000_GenomesATRNL1 
Exome Variant ServerATRNL1
ExAC (Exome Aggregation Consortium)ENSG00000107518
GNOMAD BrowserENSG00000107518
Genetic variants : HAPMAP26033
Genomic Variants (DGV)ATRNL1 [DGVbeta]
DECIPHERATRNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATRNL1 
Mutations
ICGC Data PortalATRNL1 
TCGA Data PortalATRNL1 
Broad Tumor PortalATRNL1
OASIS PortalATRNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATRNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATRNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATRNL1
DgiDB (Drug Gene Interaction Database)ATRNL1
DoCM (Curated mutations)ATRNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATRNL1 (select a term)
intoGenATRNL1
Cancer3DATRNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612869   
Orphanet
DisGeNETATRNL1
MedgenATRNL1
Genetic Testing Registry ATRNL1
NextProtQ5VV63 [Medical]
TSGene26033
GENETestsATRNL1
Target ValidationATRNL1
Huge Navigator ATRNL1 [HugePedia]
snp3D : Map Gene to Disease26033
BioCentury BCIQATRNL1
ClinGenATRNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26033
Chemical/Pharm GKB GenePA134961599
Clinical trialATRNL1
Miscellaneous
canSAR (ICR)ATRNL1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATRNL1
EVEXATRNL1
GoPubMedATRNL1
iHOPATRNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:11:39 CET 2018
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