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ATRNL1 (attractin like 1)

Identity

Alias (NCBI)ALP
bA338L11.1
bA454H24.1
HGNC (Hugo) ATRNL1
HGNC Alias symbKIAA0534
FLJ45344
ALP
HGNC Previous nameattractin-like 1
LocusID (NCBI) 26033
Atlas_Id 60654
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 115093365 and ends at 115948998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATRNL1 (10q25.3) / ATAD1 (10q23.31)CRYL1 (13q12.11) / ATRNL1 (10q25.3)IQGAP2 (5q13.3) / ATRNL1 (10q25.3)
LOC151009 () / ATRNL1 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ATRNL1   29063
Cards
Entrez_Gene (NCBI)ATRNL1    attractin like 1
AliasesALP; bA338L11.1; bA454H24.1
GeneCards (Weizmann)ATRNL1
Ensembl hg19 (Hinxton)ENSG00000107518 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107518 [Gene_View]  ENSG00000107518 [Sequence]  chr10:115093365-115948998 [Contig_View]  ATRNL1 [Vega]
ICGC DataPortalENSG00000107518
TCGA cBioPortalATRNL1
AceView (NCBI)ATRNL1
Genatlas (Paris)ATRNL1
SOURCE (Princeton)ATRNL1
Genetics Home Reference (NIH)ATRNL1
Genomic and cartography
GoldenPath hg38 (UCSC)ATRNL1  -     chr10:115093365-115948998 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRNL1  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathATRNL1 - 10q25.3 [CytoView hg19]  ATRNL1 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000107518
Genome Data Viewer NCBIATRNL1 [Mapview hg19]  
OMIM612869   
Gene and transcription
Genbank (Entrez)AB011106 AK127277 AK294917 AK299592 AW190029
RefSeq transcript (Entrez)NM_001276282 NM_207303
Consensus coding sequences : CCDS (NCBI)ATRNL1
Gene ExpressionATRNL1 [ NCBI-GEO ]   ATRNL1 [ EBI - ARRAY_EXPRESS ]   ATRNL1 [ SEEK ]   ATRNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATRNL1 [ Firebrowse - Broad ]
GenevisibleExpression of ATRNL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26033
GTEX Portal (Tissue expression)ATRNL1
Human Protein AtlasENSG00000107518-ATRNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV63
PhosPhoSitePlusQ5VV63
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)    CUB (PS01180)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)   
Domains : Interpro (EBI)Attractin-like_CTLD    C-type_lectin-like    C-type_lectin-like/link_sf    CTDL_fold    CUB_dom    EGF-like_dom    EGF_extracell    Kelch-typ_b-propeller    Laminin_EGF    Plexin_repeat    PSI    Sperma_CUB_dom_sf   
Domain families : Pfam (Sanger)CUB (PF00431)    EGF_2 (PF07974)    Lectin_C (PF00059)    PSI (PF01437)   
Domain families : Pfam (NCBI)pfam00431    pfam07974    pfam00059    pfam01437   
Domain families : Smart (EMBL)CLECT (SM00034)  CUB (SM00042)  EGF (SM00181)  EGF_Lam (SM00180)  PSI (SM00423)  
Conserved Domain (NCBI)ATRNL1
SuperfamilyQ5VV63
AlphaFold pdb e-kbQ5VV63   
Human Protein Atlas [tissue]ENSG00000107518-ATRNL1 [tissue]
HPRD12504
Protein Interaction databases
DIP (DOE-UCLA)Q5VV63
IntAct (EBI)Q5VV63
BioGRIDATRNL1
STRING (EMBL)ATRNL1
ZODIACATRNL1
Ontologies - Pathways
QuickGOQ5VV63
Ontology : AmiGObasement membrane  G protein-coupled receptor signaling pathway  animal organ morphogenesis  tissue development  integral component of membrane  cell migration  carbohydrate binding  substrate adhesion-dependent cell spreading  
Ontology : EGO-EBIbasement membrane  G protein-coupled receptor signaling pathway  animal organ morphogenesis  tissue development  integral component of membrane  cell migration  carbohydrate binding  substrate adhesion-dependent cell spreading  
NDEx NetworkATRNL1
Atlas of Cancer Signalling NetworkATRNL1
Wikipedia pathwaysATRNL1
Orthology - Evolution
OrthoDB26033
GeneTree (enSembl)ENSG00000107518
Phylogenetic Trees/Animal Genes : TreeFamATRNL1
Homologs : HomoloGeneATRNL1
Homology/Alignments : Family Browser (UCSC)ATRNL1
Gene fusions - Rearrangements
Fusion : QuiverATRNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATRNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATRNL1
dbVarATRNL1
ClinVarATRNL1
MonarchATRNL1
1000_GenomesATRNL1 
Exome Variant ServerATRNL1
GNOMAD BrowserENSG00000107518
Varsome BrowserATRNL1
ACMGATRNL1 variants
VarityQ5VV63
Genomic Variants (DGV)ATRNL1 [DGVbeta]
DECIPHERATRNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATRNL1 
Mutations
ICGC Data PortalATRNL1 
TCGA Data PortalATRNL1 
Broad Tumor PortalATRNL1
OASIS PortalATRNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATRNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATRNL1
Mutations and Diseases : HGMDATRNL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATRNL1
DgiDB (Drug Gene Interaction Database)ATRNL1
DoCM (Curated mutations)ATRNL1
CIViC (Clinical Interpretations of Variants in Cancer)ATRNL1
Cancer3DATRNL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612869   
Orphanet
DisGeNETATRNL1
MedgenATRNL1
Genetic Testing Registry ATRNL1
NextProtQ5VV63 [Medical]
GENETestsATRNL1
Target ValidationATRNL1
Huge Navigator ATRNL1 [HugePedia]
ClinGenATRNL1
Clinical trials, drugs, therapy
MyCancerGenomeATRNL1
Protein Interactions : CTDATRNL1
Pharm GKB GenePA134961599
PharosQ5VV63
Clinical trialATRNL1
Miscellaneous
canSAR (ICR)ATRNL1
HarmonizomeATRNL1
DataMed IndexATRNL1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATRNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:01 CEST 2021

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