Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATRX (ATRX chromatin remodeler)

Identity

Alias (NCBI)JMS
MRX52
RAD54
RAD54L
XH2
XNP
ZNF-HX
HGNC (Hugo) ATRX
HGNC Alias symbXH2
XNP
HGNC Alias nameRAD54 homolog (S. cerevisiae)
HGNC Previous nameRAD54
 JMS
 MRX52
HGNC Previous namealpha thalassemia/mental retardation syndrome X-linked (RAD54 (S. cerevisiae) homolog)
 Juberg-Marsidi syndrome
 mental retardation, X-linked 52
 alpha thalassemia/mental retardation syndrome X-linked
LocusID (NCBI) 546
Atlas_Id 729
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 77504878 and ends at 77786216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATRX (Xq21.1)::BCL2 (18q21.33)ATRX (Xq21.1)::VSIG4 (Xq12)ATRX (Xq21.1)::ZNF304 (19q13.43)
ATRX Xq21.1::BCL2 18q21.33ATRX Xq21.1::ZNF304 19q13.43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;X)(q21;q25) STAG2::ATRX


External links

Nomenclature
HGNC (Hugo)ATRX   886
LRG (Locus Reference Genomic)LRG_1153
Cards
Entrez_Gene (NCBI)ATRX    ATRX chromatin remodeler
AliasesJMS; MRX52; RAD54; RAD54L; 
XH2; XNP; ZNF-HX
GeneCards (Weizmann)ATRX
Ensembl hg19 (Hinxton)ENSG00000085224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085224 [Gene_View]  ENSG00000085224 [Sequence]  chrX:77504878-77786216 [Contig_View]  ATRX [Vega]
ICGC DataPortalENSG00000085224
TCGA cBioPortalATRX
AceView (NCBI)ATRX
Genatlas (Paris)ATRX
SOURCE (Princeton)ATRX
Genetics Home Reference (NIH)ATRX
Genomic and cartography
GoldenPath hg38 (UCSC)ATRX  -     chrX:77504878-77786216 -  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRX  -     Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPathATRX - Xq21.1 [CytoView hg19]  ATRX - Xq21.1 [CytoView hg38]
ImmunoBaseENSG00000085224
Genome Data Viewer NCBIATRX [Mapview hg19]  
OMIM300032   300448   301040   309580   
Gene and transcription
Genbank (Entrez)AA484729 AA732359 AB102641 AB208928 AB209545
RefSeq transcript (Entrez)NM_000489 NM_138270 NM_138271
Consensus coding sequences : CCDS (NCBI)ATRX
Gene ExpressionATRX [ NCBI-GEO ]   ATRX [ EBI - ARRAY_EXPRESS ]   ATRX [ SEEK ]   ATRX [ MEM ]
Gene Expression Viewer (FireBrowse)ATRX [ Firebrowse - Broad ]
GenevisibleExpression of ATRX in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)546
GTEX Portal (Tissue expression)ATRX
Human Protein AtlasENSG00000085224-ATRX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATRX
Human Protein Atlas [tissue]ENSG00000085224-ATRX [tissue]
HPRD02069
Protein Interaction databases
BioGRIDATRX
STRING (EMBL)ATRX
ZODIACATRX
Ontologies - Pathways
Litterature
PubMed303 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATRX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 12:23:55 CET 2022

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