Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATXN2-AS (ATXN2 antisense RNA)

Identity

Other alias-
HGNC (Hugo) ATXN2-AS
LocusID (NCBI) 102723619
Atlas_Id 78973
Location 12q24.12  [Link to chromosome band 12q24]
Location_base_pair Starts at 111599498 and ends at 111600255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATXN2-AS   51838
Cards
Entrez_Gene (NCBI)ATXN2-AS  102723619  ATXN2 antisense RNA
Aliases
GeneCards (Weizmann)ATXN2-AS
Ensembl hg19 (Hinxton)ENSG00000258099 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258099 [Gene_View]  chr12:111599498-111600255 [Contig_View]  ATXN2-AS [Vega]
ICGC DataPortalENSG00000258099
TCGA cBioPortalATXN2-AS
AceView (NCBI)ATXN2-AS
Genatlas (Paris)ATXN2-AS
WikiGenes102723619
SOURCE (Princeton)ATXN2-AS
Genetics Home Reference (NIH)ATXN2-AS
Genomic and cartography
GoldenPath hg38 (UCSC)ATXN2-AS  -     chr12:111599498-111600255 +  12q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATXN2-AS  -     12q24.12   [Description]    (hg19-Feb_2009)
EnsemblATXN2-AS - 12q24.12 [CytoView hg19]  ATXN2-AS - 12q24.12 [CytoView hg38]
Mapping of homologs : NCBIATXN2-AS [Mapview hg19]  ATXN2-AS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI927428
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATXN2-AS
Cluster EST : UnigeneHs.569200 [ NCBI ]
CGAP (NCI)Hs.569200
Alternative Splicing GalleryENSG00000258099
Gene ExpressionATXN2-AS [ NCBI-GEO ]   ATXN2-AS [ EBI - ARRAY_EXPRESS ]   ATXN2-AS [ SEEK ]   ATXN2-AS [ MEM ]
Gene Expression Viewer (FireBrowse)ATXN2-AS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723619
GTEX Portal (Tissue expression)ATXN2-AS
Human Protein AtlasENSG00000258099-ATXN2-AS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATXN2-AS
DMDM Disease mutations102723619
Blocks (Seattle)ATXN2-AS
Human Protein Atlas [tissue]ENSG00000258099-ATXN2-AS [tissue]
Protein Interaction databases
FunCoupENSG00000258099
BioGRIDATXN2-AS
STRING (EMBL)ATXN2-AS
ZODIACATXN2-AS
Ontologies - Pathways
Huge Navigator ATXN2-AS [HugePedia]
snp3D : Map Gene to Disease102723619
BioCentury BCIQATXN2-AS
ClinGenATXN2-AS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723619
Clinical trialATXN2-AS
Miscellaneous
canSAR (ICR)ATXN2-AS (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineATXN2-AS
EVEXATXN2-AS
GoPubMedATXN2-AS
iHOPATXN2-AS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:25:48 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.