Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATXN7L2 (ataxin 7 like 2)

Identity

Alias_namesataxin 7-like 2
Alias_symbol (synonym)MGC46534
FLJ00381
Other alias-
HGNC (Hugo) ATXN7L2
LocusID (NCBI) 127002
Atlas_Id 60661
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109483905 and ends at 109492798 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATXN7L2   28713
Cards
Entrez_Gene (NCBI)ATXN7L2  127002  ataxin 7 like 2
Aliases
GeneCards (Weizmann)ATXN7L2
Ensembl hg19 (Hinxton)ENSG00000162650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162650 [Gene_View]  chr1:109483905-109492798 [Contig_View]  ATXN7L2 [Vega]
ICGC DataPortalENSG00000162650
TCGA cBioPortalATXN7L2
AceView (NCBI)ATXN7L2
Genatlas (Paris)ATXN7L2
WikiGenes127002
SOURCE (Princeton)ATXN7L2
Genetics Home Reference (NIH)ATXN7L2
Genomic and cartography
GoldenPath hg38 (UCSC)ATXN7L2  -     chr1:109483905-109492798 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATXN7L2  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblATXN7L2 - 1p13.3 [CytoView hg19]  ATXN7L2 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIATXN7L2 [Mapview hg19]  ATXN7L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090460 AW873529 BC036849 BC037582 BI489982
RefSeq transcript (Entrez)NM_001350174 NM_001350175 NM_001350177 NM_153340
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATXN7L2
Cluster EST : UnigeneHs.118248 [ NCBI ]
CGAP (NCI)Hs.118248
Alternative Splicing GalleryENSG00000162650
Gene ExpressionATXN7L2 [ NCBI-GEO ]   ATXN7L2 [ EBI - ARRAY_EXPRESS ]   ATXN7L2 [ SEEK ]   ATXN7L2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATXN7L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127002
GTEX Portal (Tissue expression)ATXN7L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6C5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6C5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6C5
Splice isoforms : SwissVarQ5T6C5
PhosPhoSitePlusQ5T6C5
Domaine pattern : Prosite (Expaxy)SCA7 (PS51505)   
Domains : Interpro (EBI)SCA7_dom   
Domain families : Pfam (Sanger)SCA7 (PF08313)   
Domain families : Pfam (NCBI)pfam08313   
Conserved Domain (NCBI)ATXN7L2
DMDM Disease mutations127002
Blocks (Seattle)ATXN7L2
SuperfamilyQ5T6C5
Human Protein AtlasENSG00000162650
Peptide AtlasQ5T6C5
HPRD12506
IPIIPI00216813   IPI01010445   IPI00640237   IPI00383404   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6C5
IntAct (EBI)Q5T6C5
FunCoupENSG00000162650
BioGRIDATXN7L2
STRING (EMBL)ATXN7L2
ZODIACATXN7L2
Ontologies - Pathways
QuickGOQ5T6C5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkATXN7L2
Atlas of Cancer Signalling NetworkATXN7L2
Wikipedia pathwaysATXN7L2
Orthology - Evolution
OrthoDB127002
GeneTree (enSembl)ENSG00000162650
Phylogenetic Trees/Animal Genes : TreeFamATXN7L2
HOVERGENQ5T6C5
HOGENOMQ5T6C5
Homologs : HomoloGeneATXN7L2
Homology/Alignments : Family Browser (UCSC)ATXN7L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATXN7L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATXN7L2
dbVarATXN7L2
ClinVarATXN7L2
1000_GenomesATXN7L2 
Exome Variant ServerATXN7L2
ExAC (Exome Aggregation Consortium)ATXN7L2 (select the gene name)
Genetic variants : HAPMAP127002
Genomic Variants (DGV)ATXN7L2 [DGVbeta]
DECIPHERATXN7L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATXN7L2 
Mutations
ICGC Data PortalATXN7L2 
TCGA Data PortalATXN7L2 
Broad Tumor PortalATXN7L2
OASIS PortalATXN7L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATXN7L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATXN7L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATXN7L2
DgiDB (Drug Gene Interaction Database)ATXN7L2
DoCM (Curated mutations)ATXN7L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATXN7L2 (select a term)
intoGenATXN7L2
Cancer3DATXN7L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATXN7L2
Genetic Testing Registry ATXN7L2
NextProtQ5T6C5 [Medical]
TSGene127002
GENETestsATXN7L2
Target ValidationATXN7L2
Huge Navigator ATXN7L2 [HugePedia]
snp3D : Map Gene to Disease127002
BioCentury BCIQATXN7L2
ClinGenATXN7L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127002
Chemical/Pharm GKB GenePA134927530
Clinical trialATXN7L2
Miscellaneous
canSAR (ICR)ATXN7L2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATXN7L2
EVEXATXN7L2
GoPubMedATXN7L2
iHOPATXN7L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.