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ATXN8 (ataxin 8)

Identity

Other alias-
HGNC (Hugo) ATXN8
LocusID (NCBI) 724066
Atlas_Id 60662
Location 13q21.33  [Link to chromosome band 13q21]
Location_base_pair Starts at 70137832 and ends at 70139429 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATXN8   32925
Cards
Entrez_Gene (NCBI)ATXN8  724066  ataxin 8
Aliases
GeneCards (Weizmann)ATXN8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:70137832-70139429 [Contig_View]  ATXN8 [Vega]
TCGA cBioPortalATXN8
AceView (NCBI)ATXN8
Genatlas (Paris)ATXN8
WikiGenes724066
SOURCE (Princeton)ATXN8
Genetics Home Reference (NIH)ATXN8
Genomic and cartography
GoldenPath hg38 (UCSC)ATXN8  -     chr13:70137832-70139429 -  13q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATXN8  -     13q21.33   [Description]    (hg19-Feb_2009)
EnsemblATXN8 - 13q21.33 [CytoView hg19]  ATXN8 - 13q21.33 [CytoView hg38]
Mapping of homologs : NCBIATXN8 [Mapview hg19]  ATXN8 [Mapview hg38]
OMIM608768   613289   
Gene and transcription
Genbank (Entrez)DQ641254
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATXN8
Cluster EST : UnigeneHs.645205 [ NCBI ]
CGAP (NCI)Hs.645205
Gene ExpressionATXN8 [ NCBI-GEO ]   ATXN8 [ EBI - ARRAY_EXPRESS ]   ATXN8 [ SEEK ]   ATXN8 [ MEM ]
Gene Expression Viewer (FireBrowse)ATXN8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)724066
GTEX Portal (Tissue expression)ATXN8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ156A1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ156A1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ156A1
Splice isoforms : SwissVarQ156A1
PhosPhoSitePlusQ156A1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATXN8
DMDM Disease mutations724066
Blocks (Seattle)ATXN8
SuperfamilyQ156A1
Peptide AtlasQ156A1
IPIIPI00816562   
Protein Interaction databases
DIP (DOE-UCLA)Q156A1
IntAct (EBI)Q156A1
BioGRIDATXN8
STRING (EMBL)ATXN8
ZODIACATXN8
Ontologies - Pathways
QuickGOQ156A1
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkATXN8
Atlas of Cancer Signalling NetworkATXN8
Wikipedia pathwaysATXN8
Orthology - Evolution
OrthoDB724066
Phylogenetic Trees/Animal Genes : TreeFamATXN8
HOVERGENQ156A1
HOGENOMQ156A1
Homologs : HomoloGeneATXN8
Homology/Alignments : Family Browser (UCSC)ATXN8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATXN8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATXN8
dbVarATXN8
ClinVarATXN8
1000_GenomesATXN8 
Exome Variant ServerATXN8
ExAC (Exome Aggregation Consortium)ATXN8 (select the gene name)
Genetic variants : HAPMAP724066
Genomic Variants (DGV)ATXN8 [DGVbeta]
DECIPHERATXN8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATXN8 
Mutations
ICGC Data PortalATXN8 
TCGA Data PortalATXN8 
Broad Tumor PortalATXN8
OASIS PortalATXN8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATXN8
BioMutasearch ATXN8
DgiDB (Drug Gene Interaction Database)ATXN8
DoCM (Curated mutations)ATXN8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATXN8 (select a term)
intoGenATXN8
Cancer3DATXN8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608768    613289   
Orphanet13777   
MedgenATXN8
Genetic Testing Registry ATXN8
NextProtQ156A1 [Medical]
TSGene724066
GENETestsATXN8
Target ValidationATXN8
Huge Navigator ATXN8 [HugePedia]
snp3D : Map Gene to Disease724066
BioCentury BCIQATXN8
ClinGenATXN8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD724066
Chemical/Pharm GKB GenePA147358764
Clinical trialATXN8
Miscellaneous
canSAR (ICR)ATXN8 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATXN8
EVEXATXN8
GoPubMedATXN8
iHOPATXN8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:06 CEST 2017

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