Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATXN8OS (ATXN8 opposite strand (non-protein coding))

Identity

Alias_namesSCA8
KLHL1AS
spinocerebellar ataxia 8
kelch-like 1 antisense (Drosophila)
Alias_symbol (synonym)NCRNA00003
Other alias
HGNC (Hugo) ATXN8OS
LocusID (NCBI) 6315
Atlas_Id 60663
Location 13q21.33  [Link to chromosome band 13q21]
Location_base_pair Starts at 70681345 and ends at 70713885 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATXN8OS   10561
Cards
Entrez_Gene (NCBI)ATXN8OS  6315  ATXN8 opposite strand (non-protein coding)
AliasesKLHL1AS; NCRNA00003; SCA8
GeneCards (Weizmann)ATXN8OS
Ensembl hg19 (Hinxton) [Gene_View]  chr13:70681345-70713885 [Contig_View]  ATXN8OS [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:70681345-70713885 [Contig_View]  ATXN8OS [Vega]
TCGA cBioPortalATXN8OS
AceView (NCBI)ATXN8OS
Genatlas (Paris)ATXN8OS
WikiGenes6315
SOURCE (Princeton)ATXN8OS
Genetics Home Reference (NIH)ATXN8OS
Genomic and cartography
GoldenPath hg19 (UCSC)ATXN8OS  -     chr13:70681345-70713885 +  13q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATXN8OS  -     13q21.33   [Description]    (hg38-Dec_2013)
EnsemblATXN8OS - 13q21.33 [CytoView hg19]  ATXN8OS - 13q21.33 [CytoView hg38]
Mapping of homologs : NCBIATXN8OS [Mapview hg19]  ATXN8OS [Mapview hg38]
OMIM603680   608768   
Gene and transcription
Genbank (Entrez)AF126749 HG505718 HG505719
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_016173 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)ATXN8OS
Cluster EST : UnigeneHs.676453 [ NCBI ]
CGAP (NCI)Hs.676453
Gene ExpressionATXN8OS [ NCBI-GEO ]   ATXN8OS [ EBI - ARRAY_EXPRESS ]   ATXN8OS [ SEEK ]   ATXN8OS [ MEM ]
Gene Expression Viewer (FireBrowse)ATXN8OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6315
GTEX Portal (Tissue expression)ATXN8OS
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATXN8OS
DMDM Disease mutations6315
Blocks (Seattle)ATXN8OS
Protein Interaction databases
BioGRIDATXN8OS
STRING (EMBL)ATXN8OS
ZODIACATXN8OS
Ontologies - Pathways
Huge Navigator ATXN8OS [HugePedia]
snp3D : Map Gene to Disease6315
BioCentury BCIQATXN8OS
ClinGenATXN8OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6315
Chemical/Pharm GKB GenePA34974
Clinical trialATXN8OS
Miscellaneous
canSAR (ICR)ATXN8OS (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATXN8OS
EVEXATXN8OS
GoPubMedATXN8OS
iHOPATXN8OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:55:30 CET 2017

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