Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATXN8OS (ATXN8 opposite strand (non-protein coding))

Identity

Alias_namesSCA8
KLHL1AS
spinocerebellar ataxia 8
kelch-like 1 antisense (Drosophila)
Alias_symbol (synonym)NCRNA00003
Other alias
HGNC (Hugo) ATXN8OS
LocusID (NCBI) 6315
Atlas_Id 60663
Location 13q21.33  [Link to chromosome band 13q21]
Location_base_pair Starts at 70107213 and ends at 70139753 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATXN8OS   10561
Cards
Entrez_Gene (NCBI)ATXN8OS  6315  ATXN8 opposite strand (non-protein coding)
AliasesKLHL1AS; NCRNA00003; SCA8
GeneCards (Weizmann)ATXN8OS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:70107213-70139753 [Contig_View]  ATXN8OS [Vega]
TCGA cBioPortalATXN8OS
AceView (NCBI)ATXN8OS
Genatlas (Paris)ATXN8OS
WikiGenes6315
SOURCE (Princeton)ATXN8OS
Genetics Home Reference (NIH)ATXN8OS
Genomic and cartography
GoldenPath hg38 (UCSC)ATXN8OS  -     chr13:70107213-70139753 +  13q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATXN8OS  -     13q21.33   [Description]    (hg19-Feb_2009)
EnsemblATXN8OS - 13q21.33 [CytoView hg19]  ATXN8OS - 13q21.33 [CytoView hg38]
Mapping of homologs : NCBIATXN8OS [Mapview hg19]  ATXN8OS [Mapview hg38]
OMIM603680   608768   
Gene and transcription
Genbank (Entrez)AF126749
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATXN8OS
Cluster EST : UnigeneHs.676453 [ NCBI ]
CGAP (NCI)Hs.676453
Gene ExpressionATXN8OS [ NCBI-GEO ]   ATXN8OS [ EBI - ARRAY_EXPRESS ]   ATXN8OS [ SEEK ]   ATXN8OS [ MEM ]
Gene Expression Viewer (FireBrowse)ATXN8OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6315
GTEX Portal (Tissue expression)ATXN8OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMR3
Splice isoforms : SwissVarP0DMR3
PhosPhoSitePlusP0DMR3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATXN8OS
DMDM Disease mutations6315
Blocks (Seattle)ATXN8OS
SuperfamilyP0DMR3
Peptide AtlasP0DMR3
Protein Interaction databases
DIP (DOE-UCLA)P0DMR3
IntAct (EBI)P0DMR3
BioGRIDATXN8OS
STRING (EMBL)ATXN8OS
ZODIACATXN8OS
Ontologies - Pathways
QuickGOP0DMR3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkATXN8OS
Atlas of Cancer Signalling NetworkATXN8OS
Wikipedia pathwaysATXN8OS
Orthology - Evolution
OrthoDB6315
Phylogenetic Trees/Animal Genes : TreeFamATXN8OS
HOVERGENP0DMR3
HOGENOMP0DMR3
Homologs : HomoloGeneATXN8OS
Homology/Alignments : Family Browser (UCSC)ATXN8OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATXN8OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATXN8OS
dbVarATXN8OS
ClinVarATXN8OS
1000_GenomesATXN8OS 
Exome Variant ServerATXN8OS
ExAC (Exome Aggregation Consortium)ATXN8OS (select the gene name)
Genetic variants : HAPMAP6315
Genomic Variants (DGV)ATXN8OS [DGVbeta]
DECIPHERATXN8OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATXN8OS 
Mutations
ICGC Data PortalATXN8OS 
TCGA Data PortalATXN8OS 
Broad Tumor PortalATXN8OS
OASIS PortalATXN8OS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATXN8OS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATXN8OS
DgiDB (Drug Gene Interaction Database)ATXN8OS
DoCM (Curated mutations)ATXN8OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATXN8OS (select a term)
intoGenATXN8OS
Cancer3DATXN8OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603680    608768   
Orphanet13777   
MedgenATXN8OS
Genetic Testing Registry ATXN8OS
NextProtP0DMR3 [Medical]
TSGene6315
GENETestsATXN8OS
Target ValidationATXN8OS
Huge Navigator ATXN8OS [HugePedia]
snp3D : Map Gene to Disease6315
BioCentury BCIQATXN8OS
ClinGenATXN8OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6315
Chemical/Pharm GKB GenePA34974
Clinical trialATXN8OS
Miscellaneous
canSAR (ICR)ATXN8OS (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATXN8OS
EVEXATXN8OS
GoPubMedATXN8OS
iHOPATXN8OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:19 CEST 2017

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