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AVL9 (AVL9 cell migration associated)

Identity

Alias_namesKIAA0241
KIAA0241
AVL9 homolog (S. cerevisiase)
Other alias
HGNC (Hugo) AVL9
LocusID (NCBI) 23080
Atlas_Id 60667
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 32495426 and ends at 32588741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AVL9 (7p14.3) / AVL9 (7p14.3)AVL9 (7p14.3) / LRAT (4q32.1)AVL9 (7p14.3) / PTTG1IP (21q22.3)
AVL9 (7p14.3) / TPM4 (19p13.12)BBS9 (7p14.3) / AVL9 (7p14.3)CPNE1 (20q11.22) / AVL9 (7p14.3)
FTH1 (11q12.3) / AVL9 (7p14.3)GOLGA3 (12q24.33) / AVL9 (7p14.3)PSCA (8q24.3) / AVL9 (7p14.3)
SPARC (5q33.1) / AVL9 (7p14.3)SSR1 (6p24.3) / AVL9 (7p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AVL9   28994
Cards
Entrez_Gene (NCBI)AVL9  23080  AVL9 cell migration associated
AliasesKIAA0241
GeneCards (Weizmann)AVL9
Ensembl hg19 (Hinxton)ENSG00000105778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105778 [Gene_View]  chr7:32495426-32588741 [Contig_View]  AVL9 [Vega]
ICGC DataPortalENSG00000105778
TCGA cBioPortalAVL9
AceView (NCBI)AVL9
Genatlas (Paris)AVL9
WikiGenes23080
SOURCE (Princeton)AVL9
Genetics Home Reference (NIH)AVL9
Genomic and cartography
GoldenPath hg38 (UCSC)AVL9  -     chr7:32495426-32588741 +  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AVL9  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblAVL9 - 7p14.3 [CytoView hg19]  AVL9 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBIAVL9 [Mapview hg19]  AVL9 [Mapview hg38]
OMIM612927   
Gene and transcription
Genbank (Entrez)AK090619 AL833560 BC027724 CN312870 D87682
RefSeq transcript (Entrez)NM_015060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AVL9
Cluster EST : UnigeneHs.128056 [ NCBI ]
CGAP (NCI)Hs.128056
Alternative Splicing GalleryENSG00000105778
Gene ExpressionAVL9 [ NCBI-GEO ]   AVL9 [ EBI - ARRAY_EXPRESS ]   AVL9 [ SEEK ]   AVL9 [ MEM ]
Gene Expression Viewer (FireBrowse)AVL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23080
GTEX Portal (Tissue expression)AVL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBF6
Splice isoforms : SwissVarQ8NBF6
PhosPhoSitePlusQ8NBF6
Domains : Interpro (EBI)ABL9/DENND6_dom   
Domain families : Pfam (Sanger)Avl9 (PF09794)   
Domain families : Pfam (NCBI)pfam09794   
Conserved Domain (NCBI)AVL9
DMDM Disease mutations23080
Blocks (Seattle)AVL9
SuperfamilyQ8NBF6
Human Protein AtlasENSG00000105778
Peptide AtlasQ8NBF6
HPRD13788
IPIIPI00397348   IPI00022042   IPI01026400   IPI00903163   IPI00916804   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBF6
IntAct (EBI)Q8NBF6
FunCoupENSG00000105778
BioGRIDAVL9
STRING (EMBL)AVL9
ZODIACAVL9
Ontologies - Pathways
QuickGOQ8NBF6
Ontology : AmiGOintegral component of membrane  cell migration  recycling endosome  
Ontology : EGO-EBIintegral component of membrane  cell migration  recycling endosome  
NDEx NetworkAVL9
Atlas of Cancer Signalling NetworkAVL9
Wikipedia pathwaysAVL9
Orthology - Evolution
OrthoDB23080
GeneTree (enSembl)ENSG00000105778
Phylogenetic Trees/Animal Genes : TreeFamAVL9
HOVERGENQ8NBF6
HOGENOMQ8NBF6
Homologs : HomoloGeneAVL9
Homology/Alignments : Family Browser (UCSC)AVL9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAVL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AVL9
dbVarAVL9
ClinVarAVL9
1000_GenomesAVL9 
Exome Variant ServerAVL9
ExAC (Exome Aggregation Consortium)AVL9 (select the gene name)
Genetic variants : HAPMAP23080
Genomic Variants (DGV)AVL9 [DGVbeta]
DECIPHERAVL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAVL9 
Mutations
ICGC Data PortalAVL9 
TCGA Data PortalAVL9 
Broad Tumor PortalAVL9
OASIS PortalAVL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAVL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAVL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AVL9
DgiDB (Drug Gene Interaction Database)AVL9
DoCM (Curated mutations)AVL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AVL9 (select a term)
intoGenAVL9
Cancer3DAVL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612927   
Orphanet
MedgenAVL9
Genetic Testing Registry AVL9
NextProtQ8NBF6 [Medical]
TSGene23080
GENETestsAVL9
Target ValidationAVL9
Huge Navigator AVL9 [HugePedia]
snp3D : Map Gene to Disease23080
BioCentury BCIQAVL9
ClinGenAVL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23080
Chemical/Pharm GKB GenePA164716408
Clinical trialAVL9
Miscellaneous
canSAR (ICR)AVL9 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAVL9
EVEXAVL9
GoPubMedAVL9
iHOPAVL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:20 CEST 2017

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