Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AVPI1 (arginine vasopressin induced 1)

Identity

Alias (NCBI)PP5395
VIP32
VIT32
HGNC (Hugo) AVPI1
HGNC Alias symbVIP32
PP5395
VIT32
HGNC Previous namearginine vasopressin-induced 1
LocusID (NCBI) 60370
Atlas_Id 60668
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 97677424 and ends at 97687241 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100507412 (-) / AVPI1 (10q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AVPI1   30898
Cards
Entrez_Gene (NCBI)AVPI1    arginine vasopressin induced 1
AliasesPP5395; VIP32; VIT32
GeneCards (Weizmann)AVPI1
Ensembl hg19 (Hinxton)ENSG00000119986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119986 [Gene_View]  ENSG00000119986 [Sequence]  chr10:97677424-97687241 [Contig_View]  AVPI1 [Vega]
ICGC DataPortalENSG00000119986
TCGA cBioPortalAVPI1
AceView (NCBI)AVPI1
Genatlas (Paris)AVPI1
SOURCE (Princeton)AVPI1
Genetics Home Reference (NIH)AVPI1
Genomic and cartography
GoldenPath hg38 (UCSC)AVPI1  -     chr10:97677424-97687241 -  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AVPI1  -     10q24.2   [Description]    (hg19-Feb_2009)
GoldenPathAVPI1 - 10q24.2 [CytoView hg19]  AVPI1 - 10q24.2 [CytoView hg38]
ImmunoBaseENSG00000119986
Genome Data Viewer NCBIAVPI1 [Mapview hg19]  
OMIM618537   
Gene and transcription
Genbank (Entrez)AF131791 AF218019 AF241786 AK024533 AK222493
RefSeq transcript (Entrez)NM_021732
Consensus coding sequences : CCDS (NCBI)AVPI1
Gene ExpressionAVPI1 [ NCBI-GEO ]   AVPI1 [ EBI - ARRAY_EXPRESS ]   AVPI1 [ SEEK ]   AVPI1 [ MEM ]
Gene Expression Viewer (FireBrowse)AVPI1 [ Firebrowse - Broad ]
GenevisibleExpression of AVPI1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60370
GTEX Portal (Tissue expression)AVPI1
Human Protein AtlasENSG00000119986-AVPI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T686   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T686  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T686
PhosPhoSitePlusQ5T686
Domains : Interpro (EBI)AVPI1    Avpi1/C8orf4_dom   
Domain families : Pfam (Sanger)TC1 (PF15063)   
Domain families : Pfam (NCBI)pfam15063   
Conserved Domain (NCBI)AVPI1
SuperfamilyQ5T686
AlphaFold pdb e-kbQ5T686   
Human Protein Atlas [tissue]ENSG00000119986-AVPI1 [tissue]
HPRD16530
Protein Interaction databases
DIP (DOE-UCLA)Q5T686
IntAct (EBI)Q5T686
BioGRIDAVPI1
STRING (EMBL)AVPI1
ZODIACAVPI1
Ontologies - Pathways
QuickGOQ5T686
Ontology : AmiGOactivation of MAPK activity  protein binding  cell cycle  
Ontology : EGO-EBIactivation of MAPK activity  protein binding  cell cycle  
NDEx NetworkAVPI1
Atlas of Cancer Signalling NetworkAVPI1
Wikipedia pathwaysAVPI1
Orthology - Evolution
OrthoDB60370
GeneTree (enSembl)ENSG00000119986
Phylogenetic Trees/Animal Genes : TreeFamAVPI1
Homologs : HomoloGeneAVPI1
Homology/Alignments : Family Browser (UCSC)AVPI1
Gene fusions - Rearrangements
Fusion : QuiverAVPI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAVPI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AVPI1
dbVarAVPI1
ClinVarAVPI1
MonarchAVPI1
1000_GenomesAVPI1 
Exome Variant ServerAVPI1
GNOMAD BrowserENSG00000119986
Varsome BrowserAVPI1
ACMGAVPI1 variants
VarityQ5T686
Genomic Variants (DGV)AVPI1 [DGVbeta]
DECIPHERAVPI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAVPI1 
Mutations
ICGC Data PortalAVPI1 
TCGA Data PortalAVPI1 
Broad Tumor PortalAVPI1
OASIS PortalAVPI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAVPI1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAVPI1
Mutations and Diseases : HGMDAVPI1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAVPI1
DgiDB (Drug Gene Interaction Database)AVPI1
DoCM (Curated mutations)AVPI1
CIViC (Clinical Interpretations of Variants in Cancer)AVPI1
Cancer3DAVPI1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618537   
Orphanet
DisGeNETAVPI1
MedgenAVPI1
Genetic Testing Registry AVPI1
NextProtQ5T686 [Medical]
GENETestsAVPI1
Target ValidationAVPI1
Huge Navigator AVPI1 [HugePedia]
ClinGenAVPI1
Clinical trials, drugs, therapy
MyCancerGenomeAVPI1
Protein Interactions : CTDAVPI1
Pharm GKB GenePA134905326
PharosQ5T686
Clinical trialAVPI1
Miscellaneous
canSAR (ICR)AVPI1
HarmonizomeAVPI1
DataMed IndexAVPI1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAVPI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:04 CEST 2021

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