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AVPI1 (arginine vasopressin induced 1)

Identity

Alias_namesarginine vasopressin-induced 1
Alias_symbol (synonym)VIP32
PP5395
VIT32
Other alias
HGNC (Hugo) AVPI1
LocusID (NCBI) 60370
Atlas_Id 60668
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 97677424 and ends at 97687258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100507412 (-) / AVPI1 (10q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AVPI1   30898
Cards
Entrez_Gene (NCBI)AVPI1  60370  arginine vasopressin induced 1
AliasesPP5395; VIP32; VIT32
GeneCards (Weizmann)AVPI1
Ensembl hg19 (Hinxton)ENSG00000119986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119986 [Gene_View]  chr10:97677424-97687258 [Contig_View]  AVPI1 [Vega]
ICGC DataPortalENSG00000119986
TCGA cBioPortalAVPI1
AceView (NCBI)AVPI1
Genatlas (Paris)AVPI1
WikiGenes60370
SOURCE (Princeton)AVPI1
Genetics Home Reference (NIH)AVPI1
Genomic and cartography
GoldenPath hg38 (UCSC)AVPI1  -     chr10:97677424-97687258 -  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AVPI1  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblAVPI1 - 10q24.2 [CytoView hg19]  AVPI1 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBIAVPI1 [Mapview hg19]  AVPI1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131791 AF218019 AF241786 AK024533 AK222493
RefSeq transcript (Entrez)NM_021732
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AVPI1
Cluster EST : UnigeneHs.23918 [ NCBI ]
CGAP (NCI)Hs.23918
Alternative Splicing GalleryENSG00000119986
Gene ExpressionAVPI1 [ NCBI-GEO ]   AVPI1 [ EBI - ARRAY_EXPRESS ]   AVPI1 [ SEEK ]   AVPI1 [ MEM ]
Gene Expression Viewer (FireBrowse)AVPI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60370
GTEX Portal (Tissue expression)AVPI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T686   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T686  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T686
Splice isoforms : SwissVarQ5T686
PhosPhoSitePlusQ5T686
Domains : Interpro (EBI)Avpi1/C8orf4   
Domain families : Pfam (Sanger)TC1 (PF15063)   
Domain families : Pfam (NCBI)pfam15063   
Domain structure : Prodom (Prabi Lyon)Arg_vasopressin-induced_prot_1 (PD287216)   
Conserved Domain (NCBI)AVPI1
DMDM Disease mutations60370
Blocks (Seattle)AVPI1
SuperfamilyQ5T686
Human Protein AtlasENSG00000119986
Peptide AtlasQ5T686
HPRD16530
IPIIPI00023055   IPI00977273   
Protein Interaction databases
DIP (DOE-UCLA)Q5T686
IntAct (EBI)Q5T686
FunCoupENSG00000119986
BioGRIDAVPI1
STRING (EMBL)AVPI1
ZODIACAVPI1
Ontologies - Pathways
QuickGOQ5T686
Ontology : AmiGOactivation of MAPK activity  protein binding  cell cycle  
Ontology : EGO-EBIactivation of MAPK activity  protein binding  cell cycle  
NDEx NetworkAVPI1
Atlas of Cancer Signalling NetworkAVPI1
Wikipedia pathwaysAVPI1
Orthology - Evolution
OrthoDB60370
GeneTree (enSembl)ENSG00000119986
Phylogenetic Trees/Animal Genes : TreeFamAVPI1
HOVERGENQ5T686
HOGENOMQ5T686
Homologs : HomoloGeneAVPI1
Homology/Alignments : Family Browser (UCSC)AVPI1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAVPI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AVPI1
dbVarAVPI1
ClinVarAVPI1
1000_GenomesAVPI1 
Exome Variant ServerAVPI1
ExAC (Exome Aggregation Consortium)AVPI1 (select the gene name)
Genetic variants : HAPMAP60370
Genomic Variants (DGV)AVPI1 [DGVbeta]
DECIPHERAVPI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAVPI1 
Mutations
ICGC Data PortalAVPI1 
TCGA Data PortalAVPI1 
Broad Tumor PortalAVPI1
OASIS PortalAVPI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAVPI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAVPI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AVPI1
DgiDB (Drug Gene Interaction Database)AVPI1
DoCM (Curated mutations)AVPI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AVPI1 (select a term)
intoGenAVPI1
Cancer3DAVPI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAVPI1
Genetic Testing Registry AVPI1
NextProtQ5T686 [Medical]
TSGene60370
GENETestsAVPI1
Target ValidationAVPI1
Huge Navigator AVPI1 [HugePedia]
snp3D : Map Gene to Disease60370
BioCentury BCIQAVPI1
ClinGenAVPI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60370
Chemical/Pharm GKB GenePA134905326
Clinical trialAVPI1
Miscellaneous
canSAR (ICR)AVPI1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAVPI1
EVEXAVPI1
GoPubMedAVPI1
iHOPAVPI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:07 CEST 2017

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