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AVPR1B (arginine vasopressin receptor 1B)

Identity

Alias_namesAVPR3
Other alias
HGNC (Hugo) AVPR1B
LocusID (NCBI) 553
Atlas_Id 60669
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 206109849 and ends at 206117048 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AVPR1B   896
Cards
Entrez_Gene (NCBI)AVPR1B  553  arginine vasopressin receptor 1B
AliasesAVPR3
GeneCards (Weizmann)AVPR1B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:206109849-206117048 [Contig_View]  AVPR1B [Vega]
TCGA cBioPortalAVPR1B
AceView (NCBI)AVPR1B
Genatlas (Paris)AVPR1B
WikiGenes553
SOURCE (Princeton)AVPR1B
Genetics Home Reference (NIH)AVPR1B
Genomic and cartography
GoldenPath hg38 (UCSC)AVPR1B  -     chr1:206109849-206117048 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AVPR1B  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblAVPR1B - 1q32.1 [CytoView hg19]  AVPR1B - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIAVPR1B [Mapview hg19]  AVPR1B [Mapview hg38]
OMIM600264   
Gene and transcription
Genbank (Entrez)AF030512 AF101726 BC156078 BC157126 D31833
RefSeq transcript (Entrez)NM_000707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AVPR1B
Cluster EST : UnigeneHs.1372 [ NCBI ]
CGAP (NCI)Hs.1372
Gene ExpressionAVPR1B [ NCBI-GEO ]   AVPR1B [ EBI - ARRAY_EXPRESS ]   AVPR1B [ SEEK ]   AVPR1B [ MEM ]
Gene Expression Viewer (FireBrowse)AVPR1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)553
GTEX Portal (Tissue expression)AVPR1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47901   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47901  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47901
Splice isoforms : SwissVarP47901
PhosPhoSitePlusP47901
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)DUF1856    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Vasoprsn_rcpt    Vprs_rcpt_V1B   
Domain families : Pfam (Sanger)7tm_1 (PF00001)    DUF1856 (PF08983)   
Domain families : Pfam (NCBI)pfam00001    pfam08983   
Domain families : Smart (EMBL)DUF1856 (SM01164)  
Conserved Domain (NCBI)AVPR1B
DMDM Disease mutations553
Blocks (Seattle)AVPR1B
SuperfamilyP47901
Peptide AtlasP47901
HPRD02600
IPIIPI00026826   
Protein Interaction databases
DIP (DOE-UCLA)P47901
IntAct (EBI)P47901
BioGRIDAVPR1B
STRING (EMBL)AVPR1B
ZODIACAVPR1B
Ontologies - Pathways
QuickGOP47901
Ontology : AmiGOregulation of systemic arterial blood pressure by vasopressin  vasopressin receptor activity  protein kinase C binding  endosome  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  activation of phospholipase C activity  positive regulation of cytosolic calcium ion concentration  cellular response to hormone stimulus  peptide binding  positive regulation of vasoconstriction  response to peptide  
Ontology : EGO-EBIregulation of systemic arterial blood pressure by vasopressin  vasopressin receptor activity  protein kinase C binding  endosome  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  activation of phospholipase C activity  positive regulation of cytosolic calcium ion concentration  cellular response to hormone stimulus  peptide binding  positive regulation of vasoconstriction  response to peptide  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction    Vascular smooth muscle contraction   
NDEx NetworkAVPR1B
Atlas of Cancer Signalling NetworkAVPR1B
Wikipedia pathwaysAVPR1B
Orthology - Evolution
OrthoDB553
Phylogenetic Trees/Animal Genes : TreeFamAVPR1B
HOVERGENP47901
HOGENOMP47901
Homologs : HomoloGeneAVPR1B
Homology/Alignments : Family Browser (UCSC)AVPR1B
Gene fusions - Rearrangements
Fusion: Tumor Portal AVPR1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAVPR1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AVPR1B
dbVarAVPR1B
ClinVarAVPR1B
1000_GenomesAVPR1B 
Exome Variant ServerAVPR1B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP553
Genomic Variants (DGV)AVPR1B [DGVbeta]
DECIPHERAVPR1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAVPR1B 
Mutations
ICGC Data PortalAVPR1B 
TCGA Data PortalAVPR1B 
Broad Tumor PortalAVPR1B
OASIS PortalAVPR1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAVPR1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAVPR1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AVPR1B
DgiDB (Drug Gene Interaction Database)AVPR1B
DoCM (Curated mutations)AVPR1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AVPR1B (select a term)
intoGenAVPR1B
Cancer3DAVPR1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600264   
Orphanet
MedgenAVPR1B
Genetic Testing Registry AVPR1B
NextProtP47901 [Medical]
TSGene553
GENETestsAVPR1B
Target ValidationAVPR1B
Huge Navigator AVPR1B [HugePedia]
snp3D : Map Gene to Disease553
BioCentury BCIQAVPR1B
ClinGenAVPR1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD553
Chemical/Pharm GKB GenePA25188
Clinical trialAVPR1B
Miscellaneous
canSAR (ICR)AVPR1B (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAVPR1B
EVEXAVPR1B
GoPubMedAVPR1B
iHOPAVPR1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:38:46 CET 2017

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