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AVPR2 (arginine vasopressin receptor 2)

Identity

Other namesADHR
DI1
DIR
DIR3
NDI
V2R
HGNC (Hugo) AVPR2
LocusID (NCBI) 554
Atlas_Id 732
Location Xq28
Location_base_pair Starts at 153170529 and ends at 153172620 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AVPR2   897
Cards
Entrez_Gene (NCBI)AVPR2  554  arginine vasopressin receptor 2
AliasesADHR; DI1; DIR; DIR3; 
NDI; V2R
GeneCards (Weizmann)AVPR2
Ensembl hg19 (Hinxton)ENSG00000126895 [Gene_View]  chrX:153170529-153172620 [Contig_View]  AVPR2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126895 [Gene_View]  chrX:153170529-153172620 [Contig_View]  AVPR2 [Vega]
ICGC DataPortalENSG00000126895
TCGA cBioPortalAVPR2
AceView (NCBI)AVPR2
Genatlas (Paris)AVPR2
WikiGenes554
SOURCE (Princeton)AVPR2
Genomic and cartography
GoldenPath hg19 (UCSC)AVPR2  -     chrX:153170529-153172620 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AVPR2  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblAVPR2 - Xq28 [CytoView hg19]  AVPR2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIAVPR2 [Mapview hg19]  AVPR2 [Mapview hg38]
OMIM300538   300539   304800   
Gene and transcription
Genbank (Entrez)AF030626 AF032388 AF101727 AF101728 AY242131
RefSeq transcript (Entrez)NM_000054 NM_001146151
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_008687 NG_009645 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)AVPR2
Cluster EST : UnigeneHs.567240 [ NCBI ]
CGAP (NCI)Hs.567240
Alternative Splicing GalleryENSG00000126895
Gene ExpressionAVPR2 [ NCBI-GEO ]   AVPR2 [ EBI - ARRAY_EXPRESS ]   AVPR2 [ SEEK ]   AVPR2 [ MEM ]
Gene Expression Viewer (FireBrowse)AVPR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554
GTEX Portal (Tissue expression)AVPR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30518 (Uniprot)
NextProtP30518  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30518
Splice isoforms : SwissVarP30518 (Swissvar)
PhosPhoSitePlusP30518
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Vasoprsn_rcpt    Vprsn_rcpt_V2   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations554
Blocks (Seattle)AVPR2
PDB (SRS)4JQI   
PDB (PDBSum)4JQI   
PDB (IMB)4JQI   
PDB (RSDB)4JQI   
Structural Biology KnowledgeBase4JQI   
SCOP (Structural Classification of Proteins)4JQI   
CATH (Classification of proteins structures)4JQI   
SuperfamilyP30518
Human Protein AtlasENSG00000126895
Peptide AtlasP30518
HPRD02368
IPIIPI00026823   IPI00640964   IPI00383722   IPI00877977   IPI00878141   
Protein Interaction databases
DIP (DOE-UCLA)P30518
IntAct (EBI)P30518
FunCoupENSG00000126895
BioGRIDAVPR2
STRING (EMBL)AVPR2
ZODIACAVPR2
Ontologies - Pathways
QuickGOP30518
Ontology : AmiGOregulation of systemic arterial blood pressure by vasopressin  positive regulation of systemic arterial blood pressure  renal water homeostasis  vasopressin receptor activity  protein binding  endosome  endoplasmic reticulum  Golgi apparatus  plasma membrane  integral component of plasma membrane  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  activation of adenylate cyclase activity  I-kappaB kinase/NF-kappaB signaling  excretion  hemostasis  positive regulation of cell proliferation  positive regulation of gene expression  integral component of membrane  telencephalon development  positive regulation of protein ubiquitination  interferon-gamma production  cellular response to hormone stimulus  response to cytokine  negative regulation of urine volume  negative regulation of renal sodium excretion  peptide binding  positive regulation of vasoconstriction  response to peptide  
Ontology : EGO-EBIregulation of systemic arterial blood pressure by vasopressin  positive regulation of systemic arterial blood pressure  renal water homeostasis  vasopressin receptor activity  protein binding  endosome  endoplasmic reticulum  Golgi apparatus  plasma membrane  integral component of plasma membrane  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  activation of adenylate cyclase activity  I-kappaB kinase/NF-kappaB signaling  excretion  hemostasis  positive regulation of cell proliferation  positive regulation of gene expression  integral component of membrane  telencephalon development  positive regulation of protein ubiquitination  interferon-gamma production  cellular response to hormone stimulus  response to cytokine  negative regulation of urine volume  negative regulation of renal sodium excretion  peptide binding  positive regulation of vasoconstriction  response to peptide  
Pathways : KEGGNeuroactive ligand-receptor interaction    Vasopressin-regulated water reabsorption   
NDEx Network
Atlas of Cancer Signalling NetworkAVPR2
Wikipedia pathwaysAVPR2
Orthology - Evolution
OrthoDB554
GeneTree (enSembl)ENSG00000126895
Phylogenetic Trees/Animal Genes : TreeFamAVPR2
Homologs : HomoloGeneAVPR2
Homology/Alignments : Family Browser (UCSC)AVPR2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerAVPR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AVPR2
dbVarAVPR2
ClinVarAVPR2
1000_GenomesAVPR2 
Exome Variant ServerAVPR2
ExAC (Exome Aggregation Consortium)AVPR2 (select the gene name)
Genetic variants : HAPMAP554
Genomic Variants (DGV)AVPR2 [DGVbeta]
Mutations
ICGC Data PortalAVPR2 
TCGA Data PortalAVPR2 
Broad Tumor PortalAVPR2
OASIS PortalAVPR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAVPR2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch AVPR2
DgiDB (Drug Gene Interaction Database)AVPR2
DoCM (Curated mutations)AVPR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AVPR2 (select a term)
intoGenAVPR2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:153170529-153172620  ENSG00000126895
CONAN: Copy Number AnalysisAVPR2 
Mutations and Diseases : HGMDAVPR2
OMIM300538    300539    304800   
MedgenAVPR2
Genetic Testing Registry AVPR2
NextProtP30518 [Medical]
TSGene554
GENETestsAVPR2
Huge Navigator AVPR2 [HugePedia]
snp3D : Map Gene to Disease554
BioCentury BCIQAVPR2
ClinGenAVPR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554
Chemical/Pharm GKB GenePA25189
Clinical trialAVPR2
Miscellaneous
canSAR (ICR)AVPR2 (select the gene name)
Probes
Litterature
PubMed127 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAVPR2
EVEXAVPR2
GoPubMedAVPR2
iHOPAVPR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:55:00 CEST 2016

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