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AWAT1 (acyl-CoA wax alcohol acyltransferase 1)

Identity

Alias_namesDGAT2L3
diacylglycerol O-acyltransferase 2-like 3
Other aliasDGA2
HGNC (Hugo) AWAT1
LocusID (NCBI) 158833
Atlas_Id 60670
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70234655 and ends at 70240661 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AWAT1   23252
Cards
Entrez_Gene (NCBI)AWAT1  158833  acyl-CoA wax alcohol acyltransferase 1
AliasesDGA2; DGAT2L3
GeneCards (Weizmann)AWAT1
Ensembl hg19 (Hinxton)ENSG00000204195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204195 [Gene_View]  chrX:70234655-70240661 [Contig_View]  AWAT1 [Vega]
ICGC DataPortalENSG00000204195
TCGA cBioPortalAWAT1
AceView (NCBI)AWAT1
Genatlas (Paris)AWAT1
WikiGenes158833
SOURCE (Princeton)AWAT1
Genetics Home Reference (NIH)AWAT1
Genomic and cartography
GoldenPath hg38 (UCSC)AWAT1  -     chrX:70234655-70240661 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AWAT1  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblAWAT1 - Xq13.1 [CytoView hg19]  AWAT1 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIAWAT1 [Mapview hg19]  AWAT1 [Mapview hg38]
OMIM300924   
Gene and transcription
Genbank (Entrez)AY947638 BC039181 BC146428 BC153034 BN000155
RefSeq transcript (Entrez)NM_001013579
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AWAT1
Cluster EST : UnigeneHs.407641 [ NCBI ]
CGAP (NCI)Hs.407641
Alternative Splicing GalleryENSG00000204195
Gene ExpressionAWAT1 [ NCBI-GEO ]   AWAT1 [ EBI - ARRAY_EXPRESS ]   AWAT1 [ SEEK ]   AWAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)AWAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158833
GTEX Portal (Tissue expression)AWAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58HT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58HT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58HT5
Splice isoforms : SwissVarQ58HT5
Catalytic activity : Enzyme2.3.1.75 [ Enzyme-Expasy ]   2.3.1.752.3.1.75 [ IntEnz-EBI ]   2.3.1.75 [ BRENDA ]   2.3.1.75 [ KEGG ]   
PhosPhoSitePlusQ58HT5
Domains : Interpro (EBI)DAGAT   
Domain families : Pfam (Sanger)DAGAT (PF03982)   
Domain families : Pfam (NCBI)pfam03982   
Conserved Domain (NCBI)AWAT1
DMDM Disease mutations158833
Blocks (Seattle)AWAT1
SuperfamilyQ58HT5
Human Protein AtlasENSG00000204195
Peptide AtlasQ58HT5
HPRD10296
IPIIPI00419338   
Protein Interaction databases
DIP (DOE-UCLA)Q58HT5
IntAct (EBI)Q58HT5
FunCoupENSG00000204195
BioGRIDAWAT1
STRING (EMBL)AWAT1
ZODIACAWAT1
Ontologies - Pathways
QuickGOQ58HT5
Ontology : AmiGOendoplasmic reticulum membrane  wax biosynthetic process  integral component of membrane  arachidonic acid metabolic process  long-chain-alcohol O-fatty-acyltransferase activity  wax ester synthase activity  
Ontology : EGO-EBIendoplasmic reticulum membrane  wax biosynthetic process  integral component of membrane  arachidonic acid metabolic process  long-chain-alcohol O-fatty-acyltransferase activity  wax ester synthase activity  
NDEx NetworkAWAT1
Atlas of Cancer Signalling NetworkAWAT1
Wikipedia pathwaysAWAT1
Orthology - Evolution
OrthoDB158833
GeneTree (enSembl)ENSG00000204195
Phylogenetic Trees/Animal Genes : TreeFamAWAT1
HOVERGENQ58HT5
HOGENOMQ58HT5
Homologs : HomoloGeneAWAT1
Homology/Alignments : Family Browser (UCSC)AWAT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAWAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AWAT1
dbVarAWAT1
ClinVarAWAT1
1000_GenomesAWAT1 
Exome Variant ServerAWAT1
ExAC (Exome Aggregation Consortium)AWAT1 (select the gene name)
Genetic variants : HAPMAP158833
Genomic Variants (DGV)AWAT1 [DGVbeta]
DECIPHERAWAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAWAT1 
Mutations
ICGC Data PortalAWAT1 
TCGA Data PortalAWAT1 
Broad Tumor PortalAWAT1
OASIS PortalAWAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAWAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAWAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch AWAT1
DgiDB (Drug Gene Interaction Database)AWAT1
DoCM (Curated mutations)AWAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AWAT1 (select a term)
intoGenAWAT1
Cancer3DAWAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300924   
Orphanet
MedgenAWAT1
Genetic Testing Registry AWAT1
NextProtQ58HT5 [Medical]
TSGene158833
GENETestsAWAT1
Target ValidationAWAT1
Huge Navigator AWAT1 [HugePedia]
snp3D : Map Gene to Disease158833
BioCentury BCIQAWAT1
ClinGenAWAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158833
Chemical/Pharm GKB GenePA164716409
Clinical trialAWAT1
Miscellaneous
canSAR (ICR)AWAT1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAWAT1
EVEXAWAT1
GoPubMedAWAT1
iHOPAWAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:07 CEST 2017

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