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AWAT2 (acyl-CoA wax alcohol acyltransferase 2)

Identity

Alias_namesDGAT2L4
diacylglycerol O-acyltransferase 2-like 4
Alias_symbol (synonym)MFAT
Other aliasARAT
DC4
WS
HGNC (Hugo) AWAT2
LocusID (NCBI) 158835
Atlas_Id 60671
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70040542 and ends at 70049938 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AWAT2   23251
Cards
Entrez_Gene (NCBI)AWAT2  158835  acyl-CoA wax alcohol acyltransferase 2
AliasesARAT; DC4; DGAT2L4; MFAT; 
WS
GeneCards (Weizmann)AWAT2
Ensembl hg19 (Hinxton)ENSG00000147160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147160 [Gene_View]  chrX:70040542-70049938 [Contig_View]  AWAT2 [Vega]
ICGC DataPortalENSG00000147160
TCGA cBioPortalAWAT2
AceView (NCBI)AWAT2
Genatlas (Paris)AWAT2
WikiGenes158835
SOURCE (Princeton)AWAT2
Genetics Home Reference (NIH)AWAT2
Genomic and cartography
GoldenPath hg38 (UCSC)AWAT2  -     chrX:70040542-70049938 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AWAT2  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblAWAT2 - Xq13.1 [CytoView hg19]  AWAT2 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIAWAT2 [Mapview hg19]  AWAT2 [Mapview hg38]
OMIM300925   
Gene and transcription
Genbank (Entrez)AY605053 BC063698 BC146452 BC153070 BN000156
RefSeq transcript (Entrez)NM_001002254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AWAT2
Cluster EST : UnigeneHs.661507 [ NCBI ]
CGAP (NCI)Hs.661507
Alternative Splicing GalleryENSG00000147160
Gene ExpressionAWAT2 [ NCBI-GEO ]   AWAT2 [ EBI - ARRAY_EXPRESS ]   AWAT2 [ SEEK ]   AWAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)AWAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158835
GTEX Portal (Tissue expression)AWAT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6E213   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6E213  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6E213
Splice isoforms : SwissVarQ6E213
Catalytic activity : Enzyme2.3.1.75 [ Enzyme-Expasy ]   2.3.1.752.3.1.75 [ IntEnz-EBI ]   2.3.1.75 [ BRENDA ]   2.3.1.75 [ KEGG ]   
PhosPhoSitePlusQ6E213
Domains : Interpro (EBI)DAGAT   
Domain families : Pfam (Sanger)DAGAT (PF03982)   
Domain families : Pfam (NCBI)pfam03982   
Conserved Domain (NCBI)AWAT2
DMDM Disease mutations158835
Blocks (Seattle)AWAT2
SuperfamilyQ6E213
Human Protein AtlasENSG00000147160
Peptide AtlasQ6E213
HPRD16799
IPIIPI00163334   IPI00967643   
Protein Interaction databases
DIP (DOE-UCLA)Q6E213
IntAct (EBI)Q6E213
FunCoupENSG00000147160
BioGRIDAWAT2
STRING (EMBL)AWAT2
ZODIACAWAT2
Ontologies - Pathways
QuickGOQ6E213
Ontology : AmiGO2-acylglycerol O-acyltransferase activity  endoplasmic reticulum membrane  wax biosynthetic process  integral component of membrane  acylglycerol acyl-chain remodeling  retinol metabolic process  cellular lipid metabolic process  long-chain-alcohol O-fatty-acyltransferase activity  retinol O-fatty-acyltransferase activity  wax ester synthase activity  
Ontology : EGO-EBI2-acylglycerol O-acyltransferase activity  endoplasmic reticulum membrane  wax biosynthetic process  integral component of membrane  acylglycerol acyl-chain remodeling  retinol metabolic process  cellular lipid metabolic process  long-chain-alcohol O-fatty-acyltransferase activity  retinol O-fatty-acyltransferase activity  wax ester synthase activity  
Pathways : KEGGRetinol metabolism    Vitamin digestion and absorption   
NDEx NetworkAWAT2
Atlas of Cancer Signalling NetworkAWAT2
Wikipedia pathwaysAWAT2
Orthology - Evolution
OrthoDB158835
GeneTree (enSembl)ENSG00000147160
Phylogenetic Trees/Animal Genes : TreeFamAWAT2
HOVERGENQ6E213
HOGENOMQ6E213
Homologs : HomoloGeneAWAT2
Homology/Alignments : Family Browser (UCSC)AWAT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAWAT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AWAT2
dbVarAWAT2
ClinVarAWAT2
1000_GenomesAWAT2 
Exome Variant ServerAWAT2
ExAC (Exome Aggregation Consortium)AWAT2 (select the gene name)
Genetic variants : HAPMAP158835
Genomic Variants (DGV)AWAT2 [DGVbeta]
DECIPHERAWAT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAWAT2 
Mutations
ICGC Data PortalAWAT2 
TCGA Data PortalAWAT2 
Broad Tumor PortalAWAT2
OASIS PortalAWAT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAWAT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAWAT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch AWAT2
DgiDB (Drug Gene Interaction Database)AWAT2
DoCM (Curated mutations)AWAT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AWAT2 (select a term)
intoGenAWAT2
Cancer3DAWAT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300925   
Orphanet
MedgenAWAT2
Genetic Testing Registry AWAT2
NextProtQ6E213 [Medical]
TSGene158835
GENETestsAWAT2
Target ValidationAWAT2
Huge Navigator AWAT2 [HugePedia]
snp3D : Map Gene to Disease158835
BioCentury BCIQAWAT2
ClinGenAWAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158835
Chemical/Pharm GKB GenePA164716410
Clinical trialAWAT2
Miscellaneous
canSAR (ICR)AWAT2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAWAT2
EVEXAWAT2
GoPubMedAWAT2
iHOPAWAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:07 CEST 2017

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