Atlas of Genetics and Cytogenetics in Oncology and Haematology

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AXDND1 (axonemal dynein light chain domain containing 1)

Identity

Alias (NCBI)C1orf125
HGNC (Hugo) AXDND1
HGNC Alias symbFLJ32940
HGNC Previous nameC1orf125
HGNC Previous namechromosome 1 open reading frame 125
LocusID (NCBI) 126859
Atlas_Id 60672
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 179365720 and ends at 179554735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP5I (4p16.3) / AXDND1 (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AXDND1   26564
Cards
Entrez_Gene (NCBI)AXDND1    axonemal dynein light chain domain containing 1
AliasesC1orf125
GeneCards (Weizmann)AXDND1
Ensembl hg19 (Hinxton)ENSG00000162779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162779 [Gene_View]  ENSG00000162779 [Sequence]  chr1:179365720-179554735 [Contig_View]  AXDND1 [Vega]
ICGC DataPortalENSG00000162779
TCGA cBioPortalAXDND1
AceView (NCBI)AXDND1
Genatlas (Paris)AXDND1
SOURCE (Princeton)AXDND1
Genetics Home Reference (NIH)AXDND1
Genomic and cartography
GoldenPath hg38 (UCSC)AXDND1  -     chr1:179365720-179554735 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AXDND1  -     1q25.2   [Description]    (hg19-Feb_2009)
GoldenPathAXDND1 - 1q25.2 [CytoView hg19]  AXDND1 - 1q25.2 [CytoView hg38]
ImmunoBaseENSG00000162779
genome Data Viewer NCBIAXDND1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057502 AK058167 AK093460 AK302972 AL833914
RefSeq transcript (Entrez)NM_144696 NM_182766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AXDND1
Alternative Splicing GalleryENSG00000162779
Gene ExpressionAXDND1 [ NCBI-GEO ]   AXDND1 [ EBI - ARRAY_EXPRESS ]   AXDND1 [ SEEK ]   AXDND1 [ MEM ]
Gene Expression Viewer (FireBrowse)AXDND1 [ Firebrowse - Broad ]
GenevisibleExpression of AXDND1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126859
GTEX Portal (Tissue expression)AXDND1
Human Protein AtlasENSG00000162779-AXDND1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1B0
Splice isoforms : SwissVarQ5T1B0
PhosPhoSitePlusQ5T1B0
Domains : Interpro (EBI)Axonemal_dynein_light_chain   
Domain families : Pfam (Sanger)Ax_dynein_light (PF10211)   
Domain families : Pfam (NCBI)pfam10211   
Conserved Domain (NCBI)AXDND1
Blocks (Seattle)AXDND1
SuperfamilyQ5T1B0
Human Protein Atlas [tissue]ENSG00000162779-AXDND1 [tissue]
Peptide AtlasQ5T1B0
HPRD08740
IPIIPI00844426   IPI00844148   IPI00180424   IPI00168529   IPI00966813   IPI00966560   IPI00967378   IPI00965258   IPI00966355   IPI00967169   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1B0
IntAct (EBI)Q5T1B0
BioGRIDAXDND1
STRING (EMBL)AXDND1
ZODIACAXDND1
Ontologies - Pathways
QuickGOQ5T1B0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkAXDND1
Atlas of Cancer Signalling NetworkAXDND1
Wikipedia pathwaysAXDND1
Orthology - Evolution
OrthoDB126859
GeneTree (enSembl)ENSG00000162779
Phylogenetic Trees/Animal Genes : TreeFamAXDND1
HOGENOMQ5T1B0
Homologs : HomoloGeneAXDND1
Homology/Alignments : Family Browser (UCSC)AXDND1
Gene fusions - Rearrangements
Fusion : QuiverAXDND1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAXDND1 [hg38]
dbVarAXDND1
ClinVarAXDND1
MonarchAXDND1
1000_GenomesAXDND1 
Exome Variant ServerAXDND1
GNOMAD BrowserENSG00000162779
Varsome BrowserAXDND1
Genomic Variants (DGV)AXDND1 [DGVbeta]
DECIPHERAXDND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAXDND1 
Mutations
ICGC Data PortalAXDND1 
TCGA Data PortalAXDND1 
Broad Tumor PortalAXDND1
OASIS PortalAXDND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAXDND1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAXDND1
Mutations and Diseases : HGMDAXDND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AXDND1
DgiDB (Drug Gene Interaction Database)AXDND1
DoCM (Curated mutations)AXDND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AXDND1 (select a term)
intoGenAXDND1
Cancer3DAXDND1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAXDND1
MedgenAXDND1
Genetic Testing Registry AXDND1
NextProtQ5T1B0 [Medical]
GENETestsAXDND1
Target ValidationAXDND1
Huge Navigator AXDND1 [HugePedia]
ClinGenAXDND1
Clinical trials, drugs, therapy
MyCancerGenomeAXDND1
Protein Interactions : CTD
Pharm GKB GenePA142672443
Clinical trialAXDND1
Miscellaneous
canSAR (ICR)AXDND1 (select the gene name)
HarmonizomeAXDND1
DataMed IndexAXDND1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAXDND1
EVEXAXDND1
GoPubMedAXDND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:46:47 CET 2020
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