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AZGP1 (alpha-2-glycoprotein 1, zinc-binding)

Identity

Alias_namesalpha-2-glycoprotein 1
Alias_symbol (synonym)ZA2G
ZAG
Other alias
HGNC (Hugo) AZGP1
LocusID (NCBI) 563
Atlas_Id 735
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99966727 and ends at 99976112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AZGP1 (7q22.1) / CAPRIN2 (12p11.21)AZGP1 (7q22.1) / FAR1 (11p15.2)AZGP1 (7q22.1) / GJC3 (7q22.1)
AZGP1 (7q22.1) / KLHL21 (1p36.31)AZGP1 (7q22.1) / PCSK5 (9q21.13)GJC3 (7q22.1) / AZGP1 (7q22.1)
SMURF1 (7q22.1) / AZGP1 (7q22.1)TGOLN2 (2p11.2) / AZGP1 (7q22.1)AZGP1 7q22.1 / FAR1 11p15.2
SMURF1 7q22.1 / AZGP1 7q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AZGP1   910
Cards
Entrez_Gene (NCBI)AZGP1  563  alpha-2-glycoprotein 1, zinc-binding
AliasesZA2G; ZAG
GeneCards (Weizmann)AZGP1
Ensembl hg19 (Hinxton)ENSG00000160862 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160862 [Gene_View]  chr7:99966727-99976112 [Contig_View]  AZGP1 [Vega]
ICGC DataPortalENSG00000160862
TCGA cBioPortalAZGP1
AceView (NCBI)AZGP1
Genatlas (Paris)AZGP1
WikiGenes563
SOURCE (Princeton)AZGP1
Genetics Home Reference (NIH)AZGP1
Genomic and cartography
GoldenPath hg38 (UCSC)AZGP1  -     chr7:99966727-99976112 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AZGP1  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblAZGP1 - 7q22.1 [CytoView hg19]  AZGP1 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIAZGP1 [Mapview hg19]  AZGP1 [Mapview hg38]
OMIM194460   
Gene and transcription
Genbank (Entrez)AA583051 AI678968 AW015837 BC005306 BC005908
RefSeq transcript (Entrez)NM_001185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AZGP1
Cluster EST : UnigeneHs.546239 [ NCBI ]
CGAP (NCI)Hs.546239
Alternative Splicing GalleryENSG00000160862
Gene ExpressionAZGP1 [ NCBI-GEO ]   AZGP1 [ EBI - ARRAY_EXPRESS ]   AZGP1 [ SEEK ]   AZGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)AZGP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)563
GTEX Portal (Tissue expression)AZGP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP25311   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP25311  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP25311
Splice isoforms : SwissVarP25311
PhosPhoSitePlusP25311
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog    MHC_I_a_a1/a2   
Domain families : Pfam (Sanger)C1-set (PF07654)    MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam07654    pfam00129   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)AZGP1
DMDM Disease mutations563
Blocks (Seattle)AZGP1
PDB (SRS)1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
PDB (PDBSum)1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
PDB (IMB)1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
PDB (RSDB)1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
Structural Biology KnowledgeBase1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
SCOP (Structural Classification of Proteins)1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
CATH (Classification of proteins structures)1T7V    1T7W    1T7X    1T7Y    1T7Z    1T80    1ZAG    3ES6   
SuperfamilyP25311
Human Protein AtlasENSG00000160862
Peptide AtlasP25311
HPRD01910
IPIIPI00166729   IPI00816309   IPI00939278   IPI00924948   IPI00924815   
Protein Interaction databases
DIP (DOE-UCLA)P25311
IntAct (EBI)P25311
FunCoupENSG00000160862
BioGRIDAZGP1
STRING (EMBL)AZGP1
ZODIACAZGP1
Ontologies - Pathways
QuickGOP25311
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  retina homeostasis  glycoprotein binding  antigen binding  ribonuclease activity  protein binding  extracellular region  extracellular region  extracellular space  nucleus  plasma membrane  cell adhesion  cell adhesion  negative regulation of cell proliferation  protein transmembrane transporter activity  antigen processing and presentation  transmembrane transport  extracellular exosome  protein transmembrane transport  RNA phosphodiester bond hydrolysis  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  retina homeostasis  glycoprotein binding  antigen binding  ribonuclease activity  protein binding  extracellular region  extracellular region  extracellular space  nucleus  plasma membrane  cell adhesion  cell adhesion  negative regulation of cell proliferation  protein transmembrane transporter activity  antigen processing and presentation  transmembrane transport  extracellular exosome  protein transmembrane transport  RNA phosphodiester bond hydrolysis  
NDEx NetworkAZGP1
Atlas of Cancer Signalling NetworkAZGP1
Wikipedia pathwaysAZGP1
Orthology - Evolution
OrthoDB563
GeneTree (enSembl)ENSG00000160862
Phylogenetic Trees/Animal Genes : TreeFamAZGP1
HOVERGENP25311
HOGENOMP25311
Homologs : HomoloGeneAZGP1
Homology/Alignments : Family Browser (UCSC)AZGP1
Gene fusions - Rearrangements
Fusion : MitelmanAZGP1/FAR1 [7q22.1/11p15.2]  
Fusion : MitelmanAZGP1/GJC3 [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Fusion : MitelmanSMURF1/AZGP1 [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Fusion: TCGAAZGP1 7q22.1 FAR1 11p15.2 BRCA
Fusion: TCGASMURF1 7q22.1 AZGP1 7q22.1 HNSC
Fusion Cancer (Beijing)AZGP1 [7q22.1]  -  GJC3 [7q22.1]  [FUSC002392]  [FUSC002392]  [FUSC002392]  [FUSC002392]
Fusion Cancer (Beijing)GJC3 [7q22.1]  -  AZGP1 [7q22.1]  [FUSC004163]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAZGP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AZGP1
dbVarAZGP1
ClinVarAZGP1
1000_GenomesAZGP1 
Exome Variant ServerAZGP1
ExAC (Exome Aggregation Consortium)AZGP1 (select the gene name)
Genetic variants : HAPMAP563
Genomic Variants (DGV)AZGP1 [DGVbeta]
DECIPHERAZGP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAZGP1 
Mutations
ICGC Data PortalAZGP1 
TCGA Data PortalAZGP1 
Broad Tumor PortalAZGP1
OASIS PortalAZGP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAZGP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAZGP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AZGP1
DgiDB (Drug Gene Interaction Database)AZGP1
DoCM (Curated mutations)AZGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AZGP1 (select a term)
intoGenAZGP1
Cancer3DAZGP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194460   
Orphanet
MedgenAZGP1
Genetic Testing Registry AZGP1
NextProtP25311 [Medical]
TSGene563
GENETestsAZGP1
Target ValidationAZGP1
Huge Navigator AZGP1 [HugePedia]
snp3D : Map Gene to Disease563
BioCentury BCIQAZGP1
ClinGenAZGP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD563
Chemical/Pharm GKB GenePA25203
Clinical trialAZGP1
Miscellaneous
canSAR (ICR)AZGP1 (select the gene name)
Probes
Litterature
PubMed104 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAZGP1
EVEXAZGP1
GoPubMedAZGP1
iHOPAZGP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:58:47 CEST 2017

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