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B3GALT2 (beta-1,3-galactosyltransferase 2)

Identity

Alias_namesUDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2
Alias_symbol (synonym)beta3Gal-T2
Other aliasBETA3GALT2
GLCT2
HGNC (Hugo) B3GALT2
LocusID (NCBI) 8707
Atlas_Id 60676
Location 1q31.2  [Link to chromosome band 1q31]
Location_base_pair Starts at 193178730 and ends at 193186613 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GALT2   917
Cards
Entrez_Gene (NCBI)B3GALT2  8707  beta-1,3-galactosyltransferase 2
AliasesBETA3GALT2; GLCT2; beta3Gal-T2
GeneCards (Weizmann)B3GALT2
Ensembl hg19 (Hinxton)ENSG00000162630 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162630 [Gene_View]  chr1:193178730-193186613 [Contig_View]  B3GALT2 [Vega]
ICGC DataPortalENSG00000162630
TCGA cBioPortalB3GALT2
AceView (NCBI)B3GALT2
Genatlas (Paris)B3GALT2
WikiGenes8707
SOURCE (Princeton)B3GALT2
Genetics Home Reference (NIH)B3GALT2
Genomic and cartography
GoldenPath hg38 (UCSC)B3GALT2  -     chr1:193178730-193186613 -  1q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GALT2  -     1q31.2   [Description]    (hg19-Feb_2009)
EnsemblB3GALT2 - 1q31.2 [CytoView hg19]  B3GALT2 - 1q31.2 [CytoView hg38]
Mapping of homologs : NCBIB3GALT2 [Mapview hg19]  B3GALT2 [Mapview hg38]
OMIM603018   
Gene and transcription
Genbank (Entrez)AF288390 AK314116 BC022507 DA116294 HQ447956
RefSeq transcript (Entrez)NM_003783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GALT2
Cluster EST : UnigeneHs.518834 [ NCBI ]
CGAP (NCI)Hs.518834
Alternative Splicing GalleryENSG00000162630
Gene ExpressionB3GALT2 [ NCBI-GEO ]   B3GALT2 [ EBI - ARRAY_EXPRESS ]   B3GALT2 [ SEEK ]   B3GALT2 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GALT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8707
GTEX Portal (Tissue expression)B3GALT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43825   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43825  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43825
Splice isoforms : SwissVarO43825
PhosPhoSitePlusO43825
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GALT2
DMDM Disease mutations8707
Blocks (Seattle)B3GALT2
SuperfamilyO43825
Human Protein AtlasENSG00000162630
Peptide AtlasO43825
HPRD04313
IPIIPI00021554   
Protein Interaction databases
DIP (DOE-UCLA)O43825
IntAct (EBI)O43825
FunCoupENSG00000162630
BioGRIDB3GALT2
STRING (EMBL)B3GALT2
ZODIACB3GALT2
Ontologies - Pathways
QuickGOO43825
Ontology : AmiGOGolgi membrane  protein glycosylation  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  oligosaccharide biosynthetic process  integral component of membrane  glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity  
Ontology : EGO-EBIGolgi membrane  protein glycosylation  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  oligosaccharide biosynthetic process  integral component of membrane  glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity  
Pathways : BIOCARTASteps in the Glycosylation of Mammalian N-linked Oligosaccarides [Genes]   
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GALT2
Atlas of Cancer Signalling NetworkB3GALT2
Wikipedia pathwaysB3GALT2
Orthology - Evolution
OrthoDB8707
GeneTree (enSembl)ENSG00000162630
Phylogenetic Trees/Animal Genes : TreeFamB3GALT2
HOVERGENO43825
HOGENOMO43825
Homologs : HomoloGeneB3GALT2
Homology/Alignments : Family Browser (UCSC)B3GALT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GALT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GALT2
dbVarB3GALT2
ClinVarB3GALT2
1000_GenomesB3GALT2 
Exome Variant ServerB3GALT2
ExAC (Exome Aggregation Consortium)B3GALT2 (select the gene name)
Genetic variants : HAPMAP8707
Genomic Variants (DGV)B3GALT2 [DGVbeta]
DECIPHERB3GALT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GALT2 
Mutations
ICGC Data PortalB3GALT2 
TCGA Data PortalB3GALT2 
Broad Tumor PortalB3GALT2
OASIS PortalB3GALT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GALT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GALT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GALT2
DgiDB (Drug Gene Interaction Database)B3GALT2
DoCM (Curated mutations)B3GALT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GALT2 (select a term)
intoGenB3GALT2
Cancer3DB3GALT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603018   
Orphanet
MedgenB3GALT2
Genetic Testing Registry B3GALT2
NextProtO43825 [Medical]
TSGene8707
GENETestsB3GALT2
Huge Navigator B3GALT2 [HugePedia]
snp3D : Map Gene to Disease8707
BioCentury BCIQB3GALT2
ClinGenB3GALT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8707
Chemical/Pharm GKB GenePA25210
Clinical trialB3GALT2
Miscellaneous
canSAR (ICR)B3GALT2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GALT2
EVEXB3GALT2
GoPubMedB3GALT2
iHOPB3GALT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:01:27 CEST 2017

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