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B3GALT4 (beta-1,3-galactosyltransferase 4)

Identity

Alias_namesUDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4
Alias_symbol (synonym)beta3Gal-T4
GalT4
Other aliasBETA3GALT4
GALT2
GALT4
HGNC (Hugo) B3GALT4
LocusID (NCBI) 8705
Atlas_Id 50883
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33277140 and ends at 33278825 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GALT4   919
Cards
Entrez_Gene (NCBI)B3GALT4  8705  beta-1,3-galactosyltransferase 4
AliasesBETA3GALT4; GALT2; GALT4
GeneCards (Weizmann)B3GALT4
Ensembl hg19 (Hinxton)ENSG00000235863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235863 [Gene_View]  ENSG00000235863 [Sequence]  chr6:33277140-33278825 [Contig_View]  B3GALT4 [Vega]
ICGC DataPortalENSG00000235863
TCGA cBioPortalB3GALT4
AceView (NCBI)B3GALT4
Genatlas (Paris)B3GALT4
WikiGenes8705
SOURCE (Princeton)B3GALT4
Genetics Home Reference (NIH)B3GALT4
Genomic and cartography
GoldenPath hg38 (UCSC)B3GALT4  -     chr6:33277140-33278825 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GALT4  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblB3GALT4 - 6p21.32 [CytoView hg19]  B3GALT4 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIB3GALT4 [Mapview hg19]  B3GALT4 [Mapview hg38]
OMIM603095   
Gene and transcription
Genbank (Entrez)AB026730 AF063595 AK075312 AK315647 BC032574
RefSeq transcript (Entrez)NM_003782
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167245 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)B3GALT4
Cluster EST : UnigeneHs.534375 [ NCBI ]
CGAP (NCI)Hs.534375
Alternative Splicing GalleryENSG00000235863
Gene ExpressionB3GALT4 [ NCBI-GEO ]   B3GALT4 [ EBI - ARRAY_EXPRESS ]   B3GALT4 [ SEEK ]   B3GALT4 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GALT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8705
GTEX Portal (Tissue expression)B3GALT4
Human Protein AtlasENSG00000235863-B3GALT4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96024   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO96024  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO96024
Splice isoforms : SwissVarO96024
PhosPhoSitePlusO96024
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GALT4
DMDM Disease mutations8705
Blocks (Seattle)B3GALT4
SuperfamilyO96024
Human Protein Atlas [tissue]ENSG00000235863-B3GALT4 [tissue]
Peptide AtlasO96024
HPRD04370
IPIIPI00304588   IPI00385955   
Protein Interaction databases
DIP (DOE-UCLA)O96024
IntAct (EBI)O96024
FunCoupENSG00000235863
BioGRIDB3GALT4
STRING (EMBL)B3GALT4
ZODIACB3GALT4
Ontologies - Pathways
QuickGOO96024
Ontology : AmiGOGolgi membrane  ganglioside biosynthetic process  endoplasmic reticulum  Golgi apparatus  protein glycosylation  protein glycosylation  acetylgalactosaminyltransferase activity  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  integral component of membrane  ganglioside galactosyltransferase activity  
Ontology : EGO-EBIGolgi membrane  ganglioside biosynthetic process  endoplasmic reticulum  Golgi apparatus  protein glycosylation  protein glycosylation  acetylgalactosaminyltransferase activity  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  integral component of membrane  ganglioside galactosyltransferase activity  
Pathways : KEGGOther types of O-glycan biosynthesis    Glycosphingolipid biosynthesis - ganglio series   
NDEx NetworkB3GALT4
Atlas of Cancer Signalling NetworkB3GALT4
Wikipedia pathwaysB3GALT4
Orthology - Evolution
OrthoDB8705
GeneTree (enSembl)ENSG00000235863
Phylogenetic Trees/Animal Genes : TreeFamB3GALT4
HOVERGENO96024
HOGENOMO96024
Homologs : HomoloGeneB3GALT4
Homology/Alignments : Family Browser (UCSC)B3GALT4
Gene fusions - Rearrangements
Fusion : QuiverB3GALT4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GALT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GALT4
dbVarB3GALT4
ClinVarB3GALT4
1000_GenomesB3GALT4 
Exome Variant ServerB3GALT4
ExAC (Exome Aggregation Consortium)ENSG00000235863
GNOMAD BrowserENSG00000235863
Varsome BrowserB3GALT4
Genetic variants : HAPMAP8705
Genomic Variants (DGV)B3GALT4 [DGVbeta]
DECIPHERB3GALT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GALT4 
Mutations
ICGC Data PortalB3GALT4 
TCGA Data PortalB3GALT4 
Broad Tumor PortalB3GALT4
OASIS PortalB3GALT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GALT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GALT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GALT4
DgiDB (Drug Gene Interaction Database)B3GALT4
DoCM (Curated mutations)B3GALT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GALT4 (select a term)
intoGenB3GALT4
Cancer3DB3GALT4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603095   
Orphanet
DisGeNETB3GALT4
MedgenB3GALT4
Genetic Testing Registry B3GALT4
NextProtO96024 [Medical]
TSGene8705
GENETestsB3GALT4
Target ValidationB3GALT4
Huge Navigator B3GALT4 [HugePedia]
snp3D : Map Gene to Disease8705
BioCentury BCIQB3GALT4
ClinGenB3GALT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8705
Chemical/Pharm GKB GenePA25212
Clinical trialB3GALT4
Miscellaneous
canSAR (ICR)B3GALT4 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GALT4
EVEXB3GALT4
GoPubMedB3GALT4
iHOPB3GALT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:53:21 CET 2018

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