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B3GALT5-AS1 (B3GALT5 antisense RNA 1)

Identity

Alias_namesC21orf88
chromosome 21 open reading frame 88
Other alias
HGNC (Hugo) B3GALT5-AS1
LocusID (NCBI) 114041
Atlas_Id 60677
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39597148 and ends at 39612441 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GALT5-AS1   16424
Cards
Entrez_Gene (NCBI)B3GALT5-AS1  114041  B3GALT5 antisense RNA 1
AliasesC21orf88
GeneCards (Weizmann)B3GALT5-AS1
Ensembl hg19 (Hinxton)ENSG00000184809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184809 [Gene_View]  chr21:39597148-39612441 [Contig_View]  B3GALT5-AS1 [Vega]
ICGC DataPortalENSG00000184809
TCGA cBioPortalB3GALT5-AS1
AceView (NCBI)B3GALT5-AS1
Genatlas (Paris)B3GALT5-AS1
WikiGenes114041
SOURCE (Princeton)B3GALT5-AS1
Genetics Home Reference (NIH)B3GALT5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)B3GALT5-AS1  -     chr21:39597148-39612441 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GALT5-AS1  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblB3GALT5-AS1 - 21q22.2 [CytoView hg19]  B3GALT5-AS1 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBIB3GALT5-AS1 [Mapview hg19]  B3GALT5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF426266 AF426267 AK129590 BC062296 BC080530
RefSeq transcript (Entrez)NM_153754
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GALT5-AS1
Cluster EST : UnigeneHs.375120 [ NCBI ]
CGAP (NCI)Hs.375120
Alternative Splicing GalleryENSG00000184809
Gene ExpressionB3GALT5-AS1 [ NCBI-GEO ]   B3GALT5-AS1 [ EBI - ARRAY_EXPRESS ]   B3GALT5-AS1 [ SEEK ]   B3GALT5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GALT5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114041
GTEX Portal (Tissue expression)B3GALT5-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59052   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59052  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59052
Splice isoforms : SwissVarP59052
PhosPhoSitePlusP59052
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)B3GALT5-AS1
DMDM Disease mutations114041
Blocks (Seattle)B3GALT5-AS1
SuperfamilyP59052
Human Protein AtlasENSG00000184809
Peptide AtlasP59052
HPRD09847
IPIIPI00168289   IPI00218783   IPI00443027   IPI00470787   
Protein Interaction databases
DIP (DOE-UCLA)P59052
IntAct (EBI)P59052
FunCoupENSG00000184809
BioGRIDB3GALT5-AS1
STRING (EMBL)B3GALT5-AS1
ZODIACB3GALT5-AS1
Ontologies - Pathways
QuickGOP59052
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkB3GALT5-AS1
Atlas of Cancer Signalling NetworkB3GALT5-AS1
Wikipedia pathwaysB3GALT5-AS1
Orthology - Evolution
OrthoDB114041
GeneTree (enSembl)ENSG00000184809
Phylogenetic Trees/Animal Genes : TreeFamB3GALT5-AS1
HOVERGENP59052
HOGENOMP59052
Homologs : HomoloGeneB3GALT5-AS1
Homology/Alignments : Family Browser (UCSC)B3GALT5-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GALT5-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GALT5-AS1
dbVarB3GALT5-AS1
ClinVarB3GALT5-AS1
1000_GenomesB3GALT5-AS1 
Exome Variant ServerB3GALT5-AS1
ExAC (Exome Aggregation Consortium)B3GALT5-AS1 (select the gene name)
Genetic variants : HAPMAP114041
Genomic Variants (DGV)B3GALT5-AS1 [DGVbeta]
DECIPHERB3GALT5-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GALT5-AS1 
Mutations
ICGC Data PortalB3GALT5-AS1 
TCGA Data PortalB3GALT5-AS1 
Broad Tumor PortalB3GALT5-AS1
OASIS PortalB3GALT5-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDB3GALT5-AS1
BioMutasearch B3GALT5-AS1
DgiDB (Drug Gene Interaction Database)B3GALT5-AS1
DoCM (Curated mutations)B3GALT5-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GALT5-AS1 (select a term)
intoGenB3GALT5-AS1
Cancer3DB3GALT5-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenB3GALT5-AS1
Genetic Testing Registry B3GALT5-AS1
NextProtP59052 [Medical]
TSGene114041
GENETestsB3GALT5-AS1
Target ValidationB3GALT5-AS1
Huge Navigator B3GALT5-AS1 [HugePedia]
snp3D : Map Gene to Disease114041
BioCentury BCIQB3GALT5-AS1
ClinGenB3GALT5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114041
Chemical/Pharm GKB GenePA25875
Clinical trialB3GALT5-AS1
Miscellaneous
canSAR (ICR)B3GALT5-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GALT5-AS1
EVEXB3GALT5-AS1
GoPubMedB3GALT5-AS1
iHOPB3GALT5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:23 CEST 2017

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