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B3GALT5 (beta-1,3-galactosyltransferase 5)

Identity

Alias_namesUDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5
Alias_symbol (synonym)beta3Gal-T5
B3GalT-V
GLCT5
B3T5
Other aliasB3GalTx
beta-1,3-GalTase 5
beta-3-Gx-T5
HGNC (Hugo) B3GALT5
LocusID (NCBI) 10317
Atlas_Id 737
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39612940 and ends at 39662889 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GALT5   920
Cards
Entrez_Gene (NCBI)B3GALT5  10317  beta-1,3-galactosyltransferase 5
AliasesB3GalT-V; B3GalTx; B3T5; GLCT5; 
beta-1,3-GalTase; beta-3-Gx-T5; beta3Gal-T5
GeneCards (Weizmann)B3GALT5
Ensembl hg19 (Hinxton)ENSG00000183778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183778 [Gene_View]  chr21:39612940-39662889 [Contig_View]  B3GALT5 [Vega]
ICGC DataPortalENSG00000183778
TCGA cBioPortalB3GALT5
AceView (NCBI)B3GALT5
Genatlas (Paris)B3GALT5
WikiGenes10317
SOURCE (Princeton)B3GALT5
Genetics Home Reference (NIH)B3GALT5
Genomic and cartography
GoldenPath hg38 (UCSC)B3GALT5  -     chr21:39612940-39662889 +  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GALT5  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblB3GALT5 - 21q22.2 [CytoView hg19]  B3GALT5 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBIB3GALT5 [Mapview hg19]  B3GALT5 [Mapview hg38]
OMIM604066   
Gene and transcription
Genbank (Entrez)AB020337 AK292951 AU100432 AW136254 AY372061
RefSeq transcript (Entrez)NM_001278650 NM_006057 NM_033170 NM_033171 NM_033172 NM_033173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GALT5
Cluster EST : UnigeneHs.733638 [ NCBI ]
CGAP (NCI)Hs.733638
Alternative Splicing GalleryENSG00000183778
Gene ExpressionB3GALT5 [ NCBI-GEO ]   B3GALT5 [ EBI - ARRAY_EXPRESS ]   B3GALT5 [ SEEK ]   B3GALT5 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GALT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10317
GTEX Portal (Tissue expression)B3GALT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2C3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2C3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2C3
Splice isoforms : SwissVarQ9Y2C3
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ9Y2C3
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GALT5
DMDM Disease mutations10317
Blocks (Seattle)B3GALT5
SuperfamilyQ9Y2C3
Human Protein AtlasENSG00000183778
Peptide AtlasQ9Y2C3
HPRD06818
IPIIPI00032034   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2C3
IntAct (EBI)Q9Y2C3
FunCoupENSG00000183778
BioGRIDB3GALT5
STRING (EMBL)B3GALT5
ZODIACB3GALT5
Ontologies - Pathways
QuickGOQ9Y2C3
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  Golgi apparatus  protein glycosylation  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  Golgi apparatus  protein glycosylation  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  integral component of membrane  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series    Glycosphingolipid biosynthesis - globo series   
NDEx NetworkB3GALT5
Atlas of Cancer Signalling NetworkB3GALT5
Wikipedia pathwaysB3GALT5
Orthology - Evolution
OrthoDB10317
GeneTree (enSembl)ENSG00000183778
Phylogenetic Trees/Animal Genes : TreeFamB3GALT5
HOVERGENQ9Y2C3
HOGENOMQ9Y2C3
Homologs : HomoloGeneB3GALT5
Homology/Alignments : Family Browser (UCSC)B3GALT5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GALT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GALT5
dbVarB3GALT5
ClinVarB3GALT5
1000_GenomesB3GALT5 
Exome Variant ServerB3GALT5
ExAC (Exome Aggregation Consortium)B3GALT5 (select the gene name)
Genetic variants : HAPMAP10317
Genomic Variants (DGV)B3GALT5 [DGVbeta]
DECIPHERB3GALT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GALT5 
Mutations
ICGC Data PortalB3GALT5 
TCGA Data PortalB3GALT5 
Broad Tumor PortalB3GALT5
OASIS PortalB3GALT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GALT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GALT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GALT5
DgiDB (Drug Gene Interaction Database)B3GALT5
DoCM (Curated mutations)B3GALT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GALT5 (select a term)
intoGenB3GALT5
Cancer3DB3GALT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604066   
Orphanet
MedgenB3GALT5
Genetic Testing Registry B3GALT5
NextProtQ9Y2C3 [Medical]
TSGene10317
GENETestsB3GALT5
Target ValidationB3GALT5
Huge Navigator B3GALT5 [HugePedia]
snp3D : Map Gene to Disease10317
BioCentury BCIQB3GALT5
ClinGenB3GALT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10317
Chemical/Pharm GKB GenePA25213
Clinical trialB3GALT5
Miscellaneous
canSAR (ICR)B3GALT5 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GALT5
EVEXB3GALT5
GoPubMedB3GALT5
iHOPB3GALT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:55:50 CEST 2017

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