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B3GAT2 (beta-1,3-glucuronyltransferase 2)

Identity

Alias_symbol (synonym)GlcAT-S
Other aliasGLCATS
HGNC (Hugo) B3GAT2
LocusID (NCBI) 135152
Atlas_Id 60680
Location 6q13  [Link to chromosome band 6q13]
Location_base_pair Starts at 70861366 and ends at 70957085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B3GAT2 (6q13) / SMAP1 (6q13)ZNF292 (6q14.3) / B3GAT2 (6q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q13;q14) ZNF292/B3GAT2


External links

Nomenclature
HGNC (Hugo)B3GAT2   922
Cards
Entrez_Gene (NCBI)B3GAT2  135152  beta-1,3-glucuronyltransferase 2
AliasesGLCATS
GeneCards (Weizmann)B3GAT2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:70861366-70957085 [Contig_View]  B3GAT2 [Vega]
TCGA cBioPortalB3GAT2
AceView (NCBI)B3GAT2
Genatlas (Paris)B3GAT2
WikiGenes135152
SOURCE (Princeton)B3GAT2
Genetics Home Reference (NIH)B3GAT2
Genomic and cartography
GoldenPath hg38 (UCSC)B3GAT2  -     chr6:70861366-70957085 -  6q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GAT2  -     6q13   [Description]    (hg19-Feb_2009)
EnsemblB3GAT2 - 6q13 [CytoView hg19]  B3GAT2 - 6q13 [CytoView hg38]
Mapping of homologs : NCBIB3GAT2 [Mapview hg19]  B3GAT2 [Mapview hg38]
OMIM607497   
Gene and transcription
Genbank (Entrez)AB075843 AK055248 AK290018 AY070019 BC101163
RefSeq transcript (Entrez)NM_080742
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GAT2
Cluster EST : UnigeneHs.713609 [ NCBI ]
CGAP (NCI)Hs.713609
Gene ExpressionB3GAT2 [ NCBI-GEO ]   B3GAT2 [ EBI - ARRAY_EXPRESS ]   B3GAT2 [ SEEK ]   B3GAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135152
GTEX Portal (Tissue expression)B3GAT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPZ5
Splice isoforms : SwissVarQ9NPZ5
PhosPhoSitePlusQ9NPZ5
Domains : Interpro (EBI)Glyco_trans_43    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_43 (PF03360)   
Domain families : Pfam (NCBI)pfam03360   
Conserved Domain (NCBI)B3GAT2
DMDM Disease mutations135152
Blocks (Seattle)B3GAT2
PDB (SRS)2D0J   
PDB (PDBSum)2D0J   
PDB (IMB)2D0J   
PDB (RSDB)2D0J   
Structural Biology KnowledgeBase2D0J   
SCOP (Structural Classification of Proteins)2D0J   
CATH (Classification of proteins structures)2D0J   
SuperfamilyQ9NPZ5
Peptide AtlasQ9NPZ5
HPRD06325
IPIIPI00221205   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPZ5
IntAct (EBI)Q9NPZ5
BioGRIDB3GAT2
STRING (EMBL)B3GAT2
ZODIACB3GAT2
Ontologies - Pathways
QuickGOQ9NPZ5
Ontology : AmiGO###############################################################################################################################################################################################################################################################                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                      
Pathways : KEGGGlycan structures - biosynthesis 1    Chondroitin sulfate biosynthesis   
NDEx NetworkB3GAT2
Atlas of Cancer Signalling NetworkB3GAT2
Wikipedia pathwaysB3GAT2
Orthology - Evolution
OrthoDB135152
Phylogenetic Trees/Animal Genes : TreeFamB3GAT2
HOVERGENQ9NPZ5
HOGENOMQ9NPZ5
Homologs : HomoloGeneB3GAT2
Homology/Alignments : Family Browser (UCSC)B3GAT2
Gene fusions - Rearrangements
Fusion : QuiverB3GAT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GAT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GAT2
dbVarB3GAT2
ClinVarB3GAT2
1000_GenomesB3GAT2 
Exome Variant ServerB3GAT2
Varsome BrowserB3GAT2
Genetic variants : HAPMAP135152
Genomic Variants (DGV)B3GAT2 [DGVbeta]
DECIPHERB3GAT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GAT2 
Mutations
ICGC Data PortalB3GAT2 
TCGA Data PortalB3GAT2 
Broad Tumor PortalB3GAT2
OASIS PortalB3GAT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GAT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GAT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GAT2
DgiDB (Drug Gene Interaction Database)B3GAT2
DoCM (Curated mutations)B3GAT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GAT2 (select a term)
intoGenB3GAT2
Cancer3DB3GAT2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607497   
Orphanet
DisGeNETB3GAT2
MedgenB3GAT2
Genetic Testing Registry B3GAT2
NextProtQ9NPZ5 [Medical]
TSGene135152
GENETestsB3GAT2
Target ValidationB3GAT2
Huge Navigator B3GAT2 [HugePedia]
snp3D : Map Gene to Disease135152
BioCentury BCIQB3GAT2
ClinGenB3GAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135152
Chemical/Pharm GKB GenePA25216
Clinical trialB3GAT2
Miscellaneous
canSAR (ICR)B3GAT2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GAT2
EVEXB3GAT2
GoPubMedB3GAT2
iHOPB3GAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 13:36:34 CEST 2018

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