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B3GLCT (beta 3-glucosyltransferase)

Identity

Alias_namesB3GALTL
beta 1,3-galactosyltransferase-like
Alias_symbol (synonym)B3GTL
B3Glc-T
Other aliasGal-T
beta3Glc-T
HGNC (Hugo) B3GLCT
LocusID (NCBI) 145173
Atlas_Id 60679
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 31199975 and ends at 31332274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B3GLCT (13q12.3) / MTUS2 (13q12.3)B3GLCT (13q12.3) / STK33 (11p15.4)B3GLCT (13q12.3) / TEX26 (13q12.3)
B3GALTL C13orf26B3GALTL STK33B3GALTL MTUS2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GLCT   20207
Cards
Entrez_Gene (NCBI)B3GLCT  145173  beta 3-glucosyltransferase
AliasesB3GALTL; B3GTL; B3Glc-T; Gal-T; 
beta3Glc-T
GeneCards (Weizmann)B3GLCT
Ensembl hg19 (Hinxton)ENSG00000187676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187676 [Gene_View]  chr13:31199975-31332274 [Contig_View]  B3GLCT [Vega]
ICGC DataPortalENSG00000187676
TCGA cBioPortalB3GLCT
AceView (NCBI)B3GLCT
Genatlas (Paris)B3GLCT
WikiGenes145173
SOURCE (Princeton)B3GLCT
Genetics Home Reference (NIH)B3GLCT
Genomic and cartography
GoldenPath hg38 (UCSC)B3GLCT  -     chr13:31199975-31332274 +  13q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GLCT  -     13q12.3   [Description]    (hg19-Feb_2009)
EnsemblB3GLCT - 13q12.3 [CytoView hg19]  B3GLCT - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBIB3GLCT [Mapview hg19]  B3GLCT [Mapview hg38]
OMIM261540   610308   
Gene and transcription
Genbank (Entrez)AA769548 AB101481 AK094979 AK291273 AV728071
RefSeq transcript (Entrez)NM_194318
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GLCT
Cluster EST : UnigeneHs.13205 [ NCBI ]
CGAP (NCI)Hs.13205
Alternative Splicing GalleryENSG00000187676
Gene ExpressionB3GLCT [ NCBI-GEO ]   B3GLCT [ EBI - ARRAY_EXPRESS ]   B3GLCT [ SEEK ]   B3GLCT [ MEM ]
Gene Expression Viewer (FireBrowse)B3GLCT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145173
GTEX Portal (Tissue expression)B3GLCT
Human Protein AtlasENSG00000187676-B3GLCT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Y288   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Y288  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Y288
Splice isoforms : SwissVarQ6Y288
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ6Y288
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Fringe-like    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Fringe (PF02434)   
Domain families : Pfam (NCBI)pfam02434   
Conserved Domain (NCBI)B3GLCT
DMDM Disease mutations145173
Blocks (Seattle)B3GLCT
SuperfamilyQ6Y288
Human Protein Atlas [tissue]ENSG00000187676-B3GLCT [tissue]
Peptide AtlasQ6Y288
HPRD12513
IPIIPI00375600   
Protein Interaction databases
DIP (DOE-UCLA)Q6Y288
IntAct (EBI)Q6Y288
FunCoupENSG00000187676
BioGRIDB3GLCT
STRING (EMBL)B3GLCT
ZODIACB3GLCT
Ontologies - Pathways
QuickGOQ6Y288
Ontology : AmiGOendoplasmic reticulum membrane  fucose metabolic process  integral component of membrane  transferase activity, transferring glycosyl groups  protein O-linked fucosylation  
Ontology : EGO-EBIendoplasmic reticulum membrane  fucose metabolic process  integral component of membrane  transferase activity, transferring glycosyl groups  protein O-linked fucosylation  
NDEx NetworkB3GLCT
Atlas of Cancer Signalling NetworkB3GLCT
Wikipedia pathwaysB3GLCT
Orthology - Evolution
OrthoDB145173
GeneTree (enSembl)ENSG00000187676
Phylogenetic Trees/Animal Genes : TreeFamB3GLCT
HOVERGENQ6Y288
HOGENOMQ6Y288
Homologs : HomoloGeneB3GLCT
Homology/Alignments : Family Browser (UCSC)B3GLCT
Gene fusions - Rearrangements
Fusion: TCGA_MDACCB3GALTL C13orf26
Fusion: TCGA_MDACCB3GALTL STK33
Fusion: TCGA_MDACCB3GALTL MTUS2
Tumor Fusion PortalB3GLCT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GLCT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GLCT
dbVarB3GLCT
ClinVarB3GLCT
1000_GenomesB3GLCT 
Exome Variant ServerB3GLCT
ExAC (Exome Aggregation Consortium)ENSG00000187676
GNOMAD BrowserENSG00000187676
Genetic variants : HAPMAP145173
Genomic Variants (DGV)B3GLCT [DGVbeta]
DECIPHERB3GLCT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GLCT 
Mutations
ICGC Data PortalB3GLCT 
TCGA Data PortalB3GLCT 
Broad Tumor PortalB3GLCT
OASIS PortalB3GLCT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDB3GLCT
BioMutasearch B3GLCT
DgiDB (Drug Gene Interaction Database)B3GLCT
DoCM (Curated mutations)B3GLCT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GLCT (select a term)
intoGenB3GLCT
Cancer3DB3GLCT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM261540    610308   
Orphanet968   
DisGeNETB3GLCT
MedgenB3GLCT
Genetic Testing Registry B3GLCT
NextProtQ6Y288 [Medical]
TSGene145173
GENETestsB3GLCT
Target ValidationB3GLCT
Huge Navigator B3GLCT [HugePedia]
snp3D : Map Gene to Disease145173
BioCentury BCIQB3GLCT
ClinGenB3GLCT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145173
Chemical/Pharm GKB GenePA144596515
Clinical trialB3GLCT
Miscellaneous
canSAR (ICR)B3GLCT (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GLCT
EVEXB3GLCT
GoPubMedB3GLCT
iHOPB3GLCT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:49 CET 2017

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