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B3GNT2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2)

Identity

Alias (NCBI)3-Gn-T1
3-Gn-T2
B3GN-T2
B3GNT
B3GNT-2
B3GNT1
BETA3GNT
BGNT2
BGnT-2
beta-1
beta3Gn-T1
beta3Gn-T2
HGNC (Hugo) B3GNT2
HGNC Alias symbB3GNT-2
BETA3GNT
B3GN-T2
B3GN-T1
HGNC Previous nameB3GNT1
HGNC Previous nameUDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
LocusID (NCBI) 10678
Atlas_Id 46147
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 62196115 and ends at 62224731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNTN4 (3p26.3) / B3GNT2 (2p15)MALAT1 (11q13.1) / B3GNT2 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)B3GNT2   15629
Cards
Entrez_Gene (NCBI)B3GNT2    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Aliases3-Gn-T1; 3-Gn-T2; B3GN-T2; B3GNT; 
B3GNT-2; B3GNT1; BETA3GNT; BGNT2; BGnT-2; beta-1; beta3Gn-T1; beta3Gn-T2
GeneCards (Weizmann)B3GNT2
Ensembl hg19 (Hinxton)ENSG00000170340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170340 [Gene_View]  ENSG00000170340 [Sequence]  chr2:62196115-62224731 [Contig_View]  B3GNT2 [Vega]
ICGC DataPortalENSG00000170340
TCGA cBioPortalB3GNT2
AceView (NCBI)B3GNT2
Genatlas (Paris)B3GNT2
SOURCE (Princeton)B3GNT2
Genetics Home Reference (NIH)B3GNT2
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT2  -     chr2:62196115-62224731 +  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT2  -     2p15   [Description]    (hg19-Feb_2009)
GoldenPathB3GNT2 - 2p15 [CytoView hg19]  B3GNT2 - 2p15 [CytoView hg38]
ImmunoBaseENSG00000170340
Genome Data Viewer NCBIB3GNT2 [Mapview hg19]  
OMIM605581   
Gene and transcription
Genbank (Entrez)AB049584 AF092051 AF288208 AF288209 AJ006077
RefSeq transcript (Entrez)NM_001319075 NM_006577 NM_018554 NM_033252
Consensus coding sequences : CCDS (NCBI)B3GNT2
Gene ExpressionB3GNT2 [ NCBI-GEO ]   B3GNT2 [ EBI - ARRAY_EXPRESS ]   B3GNT2 [ SEEK ]   B3GNT2 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT2 [ Firebrowse - Broad ]
GenevisibleExpression of B3GNT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10678
GTEX Portal (Tissue expression)B3GNT2
Human Protein AtlasENSG00000170340-B3GNT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY97
PhosPhoSitePlusQ9NY97
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT2
SuperfamilyQ9NY97
AlphaFold pdb e-kbQ9NY97   
Human Protein Atlas [tissue]ENSG00000170340-B3GNT2 [tissue]
HPRD09279
Protein Interaction databases
DIP (DOE-UCLA)Q9NY97
IntAct (EBI)Q9NY97
BioGRIDB3GNT2
STRING (EMBL)B3GNT2
ZODIACB3GNT2
Ontologies - Pathways
QuickGOQ9NY97
Ontology : AmiGOGolgi membrane  protein binding  Golgi apparatus  protein glycosylation  axon guidance  sensory perception of smell  acetylglucosaminyltransferase activity  acetylgalactosaminyltransferase activity  beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  poly-N-acetyllactosamine biosynthetic process  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi apparatus  protein glycosylation  axon guidance  sensory perception of smell  acetylglucosaminyltransferase activity  acetylgalactosaminyltransferase activity  beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  poly-N-acetyllactosamine biosynthetic process  cellular response to leukemia inhibitory factor  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate    Glycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GNT2
Atlas of Cancer Signalling NetworkB3GNT2
Wikipedia pathwaysB3GNT2
Orthology - Evolution
OrthoDB10678
GeneTree (enSembl)ENSG00000170340
Phylogenetic Trees/Animal Genes : TreeFamB3GNT2
Homologs : HomoloGeneB3GNT2
Homology/Alignments : Family Browser (UCSC)B3GNT2
Gene fusions - Rearrangements
Fusion : QuiverB3GNT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT2
dbVarB3GNT2
ClinVarB3GNT2
MonarchB3GNT2
1000_GenomesB3GNT2 
Exome Variant ServerB3GNT2
GNOMAD BrowserENSG00000170340
Varsome BrowserB3GNT2
ACMGB3GNT2 variants
VarityQ9NY97
Genomic Variants (DGV)B3GNT2 [DGVbeta]
DECIPHERB3GNT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT2 
Mutations
ICGC Data PortalB3GNT2 
TCGA Data PortalB3GNT2 
Broad Tumor PortalB3GNT2
OASIS PortalB3GNT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DB3GNT2
Mutations and Diseases : HGMDB3GNT2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaB3GNT2
DgiDB (Drug Gene Interaction Database)B3GNT2
DoCM (Curated mutations)B3GNT2
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT2
Cancer3DB3GNT2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605581   
Orphanet
DisGeNETB3GNT2
MedgenB3GNT2
Genetic Testing Registry B3GNT2
NextProtQ9NY97 [Medical]
GENETestsB3GNT2
Target ValidationB3GNT2
Huge Navigator B3GNT2 [HugePedia]
ClinGenB3GNT2
Clinical trials, drugs, therapy
MyCancerGenomeB3GNT2
Protein Interactions : CTDB3GNT2
Pharm GKB GenePA25218
PharosQ9NY97
Clinical trialB3GNT2
Miscellaneous
canSAR (ICR)B3GNT2
HarmonizomeB3GNT2
DataMed IndexB3GNT2
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXB3GNT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:00:48 CEST 2021

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