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B3GNT2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2)

Identity

Alias_namesB3GNT1
UDP-GlcNAc:betaGal beta-1
Alias_symbol (synonym)B3GNT-2
BETA3GNT
B3GN-T2
B3GN-T1
Other alias3-Gn-T1
3-Gn-T2
B3GNT
BGNT2
BGnT-2
beta-1
beta3Gn-T1
beta3Gn-T2
HGNC (Hugo) B3GNT2
LocusID (NCBI) 10678
Atlas_Id 46147
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 62215521 and ends at 62224731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNTN4 (3p26.3) / B3GNT2 (2p15)MALAT1 (11q13.1) / B3GNT2 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT2   15629
Cards
Entrez_Gene (NCBI)B3GNT2  10678  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Aliases3-Gn-T1; 3-Gn-T2; B3GN-T2; B3GNT; 
B3GNT-2; B3GNT1; BETA3GNT; BGNT2; BGnT-2; beta-1; beta3Gn-T1; beta3Gn-T2
GeneCards (Weizmann)B3GNT2
Ensembl hg19 (Hinxton)ENSG00000170340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170340 [Gene_View]  chr2:62215521-62224731 [Contig_View]  B3GNT2 [Vega]
ICGC DataPortalENSG00000170340
TCGA cBioPortalB3GNT2
AceView (NCBI)B3GNT2
Genatlas (Paris)B3GNT2
WikiGenes10678
SOURCE (Princeton)B3GNT2
Genetics Home Reference (NIH)B3GNT2
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT2  -     chr2:62215521-62224731 +  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT2  -     2p15   [Description]    (hg19-Feb_2009)
EnsemblB3GNT2 - 2p15 [CytoView hg19]  B3GNT2 - 2p15 [CytoView hg38]
Mapping of homologs : NCBIB3GNT2 [Mapview hg19]  B3GNT2 [Mapview hg38]
OMIM605581   
Gene and transcription
Genbank (Entrez)AB049584 AF092051 AF288208 AF288209 AJ006077
RefSeq transcript (Entrez)NM_001319075 NM_006577 NM_018554 NM_033252
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GNT2
Cluster EST : UnigeneHs.173203 [ NCBI ]
CGAP (NCI)Hs.173203
Alternative Splicing GalleryENSG00000170340
Gene ExpressionB3GNT2 [ NCBI-GEO ]   B3GNT2 [ EBI - ARRAY_EXPRESS ]   B3GNT2 [ SEEK ]   B3GNT2 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10678
GTEX Portal (Tissue expression)B3GNT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY97
Splice isoforms : SwissVarQ9NY97
PhosPhoSitePlusQ9NY97
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT2
DMDM Disease mutations10678
Blocks (Seattle)B3GNT2
SuperfamilyQ9NY97
Human Protein AtlasENSG00000170340
Peptide AtlasQ9NY97
HPRD09279
IPIIPI00257239   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY97
IntAct (EBI)Q9NY97
FunCoupENSG00000170340
BioGRIDB3GNT2
STRING (EMBL)B3GNT2
ZODIACB3GNT2
Ontologies - Pathways
QuickGOQ9NY97
Ontology : AmiGOGolgi membrane  axon guidance  sensory perception of smell  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  axon guidance  sensory perception of smell  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  extracellular exosome  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate    Glycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GNT2
Atlas of Cancer Signalling NetworkB3GNT2
Wikipedia pathwaysB3GNT2
Orthology - Evolution
OrthoDB10678
GeneTree (enSembl)ENSG00000170340
Phylogenetic Trees/Animal Genes : TreeFamB3GNT2
HOVERGENQ9NY97
HOGENOMQ9NY97
Homologs : HomoloGeneB3GNT2
Homology/Alignments : Family Browser (UCSC)B3GNT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT2
dbVarB3GNT2
ClinVarB3GNT2
1000_GenomesB3GNT2 
Exome Variant ServerB3GNT2
ExAC (Exome Aggregation Consortium)B3GNT2 (select the gene name)
Genetic variants : HAPMAP10678
Genomic Variants (DGV)B3GNT2 [DGVbeta]
DECIPHERB3GNT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT2 
Mutations
ICGC Data PortalB3GNT2 
TCGA Data PortalB3GNT2 
Broad Tumor PortalB3GNT2
OASIS PortalB3GNT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT2
DgiDB (Drug Gene Interaction Database)B3GNT2
DoCM (Curated mutations)B3GNT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT2 (select a term)
intoGenB3GNT2
Cancer3DB3GNT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605581   
Orphanet
MedgenB3GNT2
Genetic Testing Registry B3GNT2
NextProtQ9NY97 [Medical]
TSGene10678
GENETestsB3GNT2
Target ValidationB3GNT2
Huge Navigator B3GNT2 [HugePedia]
snp3D : Map Gene to Disease10678
BioCentury BCIQB3GNT2
ClinGenB3GNT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10678
Chemical/Pharm GKB GenePA25218
Clinical trialB3GNT2
Miscellaneous
canSAR (ICR)B3GNT2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT2
EVEXB3GNT2
GoPubMedB3GNT2
iHOPB3GNT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:08 CEST 2017

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