Atlas of Genetics and Cytogenetics in Oncology and Haematology


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B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3)

Identity

Alias_namesTMEM3
Alias_symbol (synonym)B3GN-T3
beta3Gn-T3
HP10328
B3GNT-3
Other aliasB3GAL-T8
HGNC (Hugo) B3GNT3
LocusID (NCBI) 10331
Atlas_Id 53835
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17795110 and ends at 17813576 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT3   13528
Cards
Entrez_Gene (NCBI)B3GNT3  10331  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
AliasesB3GAL-T8; B3GN-T3; B3GNT-3; HP10328; 
TMEM3; beta3Gn-T3
GeneCards (Weizmann)B3GNT3
Ensembl hg19 (Hinxton)ENSG00000179913 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179913 [Gene_View]  chr19:17795110-17813576 [Contig_View]  B3GNT3 [Vega]
ICGC DataPortalENSG00000179913
TCGA cBioPortalB3GNT3
AceView (NCBI)B3GNT3
Genatlas (Paris)B3GNT3
WikiGenes10331
SOURCE (Princeton)B3GNT3
Genetics Home Reference (NIH)B3GNT3
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT3  -     chr19:17795110-17813576 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT3  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblB3GNT3 - 19p13.11 [CytoView hg19]  B3GNT3 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIB3GNT3 [Mapview hg19]  B3GNT3 [Mapview hg38]
OMIM605863   
Gene and transcription
Genbank (Entrez)AB015630 AB049585 AF293973 AJ130847 AJ278961
RefSeq transcript (Entrez)NM_014256
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GNT3
Cluster EST : UnigeneHs.657825 [ NCBI ]
CGAP (NCI)Hs.657825
Alternative Splicing GalleryENSG00000179913
Gene ExpressionB3GNT3 [ NCBI-GEO ]   B3GNT3 [ EBI - ARRAY_EXPRESS ]   B3GNT3 [ SEEK ]   B3GNT3 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10331
GTEX Portal (Tissue expression)B3GNT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2A9
Splice isoforms : SwissVarQ9Y2A9
PhosPhoSitePlusQ9Y2A9
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT3
DMDM Disease mutations10331
Blocks (Seattle)B3GNT3
SuperfamilyQ9Y2A9
Human Protein AtlasENSG00000179913
Peptide AtlasQ9Y2A9
HPRD10431
IPIIPI00031983   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2A9
IntAct (EBI)Q9Y2A9
FunCoupENSG00000179913
BioGRIDB3GNT3
STRING (EMBL)B3GNT3
ZODIACB3GNT3
Ontologies - Pathways
QuickGOQ9Y2A9
Ontology : AmiGOGolgi membrane  integral component of plasma membrane  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity  
Ontology : EGO-EBIGolgi membrane  integral component of plasma membrane  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GNT3
Atlas of Cancer Signalling NetworkB3GNT3
Wikipedia pathwaysB3GNT3
Orthology - Evolution
OrthoDB10331
GeneTree (enSembl)ENSG00000179913
Phylogenetic Trees/Animal Genes : TreeFamB3GNT3
HOVERGENQ9Y2A9
HOGENOMQ9Y2A9
Homologs : HomoloGeneB3GNT3
Homology/Alignments : Family Browser (UCSC)B3GNT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT3
dbVarB3GNT3
ClinVarB3GNT3
1000_GenomesB3GNT3 
Exome Variant ServerB3GNT3
ExAC (Exome Aggregation Consortium)B3GNT3 (select the gene name)
Genetic variants : HAPMAP10331
Genomic Variants (DGV)B3GNT3 [DGVbeta]
DECIPHERB3GNT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT3 
Mutations
ICGC Data PortalB3GNT3 
TCGA Data PortalB3GNT3 
Broad Tumor PortalB3GNT3
OASIS PortalB3GNT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT3
DgiDB (Drug Gene Interaction Database)B3GNT3
DoCM (Curated mutations)B3GNT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT3 (select a term)
intoGenB3GNT3
Cancer3DB3GNT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605863   
Orphanet
MedgenB3GNT3
Genetic Testing Registry B3GNT3
NextProtQ9Y2A9 [Medical]
TSGene10331
GENETestsB3GNT3
Target ValidationB3GNT3
Huge Navigator B3GNT3 [HugePedia]
snp3D : Map Gene to Disease10331
BioCentury BCIQB3GNT3
ClinGenB3GNT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10331
Chemical/Pharm GKB GenePA25219
Clinical trialB3GNT3
Miscellaneous
canSAR (ICR)B3GNT3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT3
EVEXB3GNT3
GoPubMedB3GNT3
iHOPB3GNT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:47:42 CEST 2017

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