Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3)

Identity

Alias (NCBI)B3GAL-T8
B3GN-T3
B3GNT-3
HP10328
TMEM3
beta3Gn-T3
HGNC (Hugo) B3GNT3
HGNC Alias symbB3GN-T3
beta3Gn-T3
HP10328
B3GNT-3
HGNC Alias nameputative type II membrane protein
 beta-1,3-N-acetylglucosaminyltransferase bGnT-3
 transmembrane protein 3
HGNC Previous nameTMEM3
LocusID (NCBI) 10331
Atlas_Id 53835
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17795138 and ends at 17813576 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)B3GNT3   13528
Cards
Entrez_Gene (NCBI)B3GNT3    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
AliasesB3GAL-T8; B3GN-T3; B3GNT-3; HP10328; 
TMEM3; beta3Gn-T3
GeneCards (Weizmann)B3GNT3
Ensembl hg19 (Hinxton)ENSG00000179913 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179913 [Gene_View]  ENSG00000179913 [Sequence]  chr19:17795138-17813576 [Contig_View]  B3GNT3 [Vega]
ICGC DataPortalENSG00000179913
TCGA cBioPortalB3GNT3
AceView (NCBI)B3GNT3
Genatlas (Paris)B3GNT3
SOURCE (Princeton)B3GNT3
Genetics Home Reference (NIH)B3GNT3
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT3  -     chr19:17795138-17813576 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT3  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathB3GNT3 - 19p13.11 [CytoView hg19]  B3GNT3 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000179913
Genome Data Viewer NCBIB3GNT3 [Mapview hg19]  
OMIM605863   
Gene and transcription
Genbank (Entrez)AB015630 AB049585 AF293973 AJ130847 AJ278961
RefSeq transcript (Entrez)NM_014256
Consensus coding sequences : CCDS (NCBI)B3GNT3
Gene ExpressionB3GNT3 [ NCBI-GEO ]   B3GNT3 [ EBI - ARRAY_EXPRESS ]   B3GNT3 [ SEEK ]   B3GNT3 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT3 [ Firebrowse - Broad ]
GenevisibleExpression of B3GNT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10331
GTEX Portal (Tissue expression)B3GNT3
Human Protein AtlasENSG00000179913-B3GNT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2A9
PhosPhoSitePlusQ9Y2A9
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT3
SuperfamilyQ9Y2A9
AlphaFold pdb e-kbQ9Y2A9   
Human Protein Atlas [tissue]ENSG00000179913-B3GNT3 [tissue]
HPRD10431
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2A9
IntAct (EBI)Q9Y2A9
BioGRIDB3GNT3
STRING (EMBL)B3GNT3
ZODIACB3GNT3
Ontologies - Pathways
QuickGOQ9Y2A9
Ontology : AmiGOGolgi membrane  Golgi apparatus  integral component of plasma membrane  protein glycosylation  acetylglucosaminyltransferase activity  acetylgalactosaminyltransferase activity  beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  poly-N-acetyllactosamine biosynthetic process  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  integral component of plasma membrane  protein glycosylation  acetylglucosaminyltransferase activity  acetylgalactosaminyltransferase activity  beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  poly-N-acetyllactosamine biosynthetic process  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GNT3
Atlas of Cancer Signalling NetworkB3GNT3
Wikipedia pathwaysB3GNT3
Orthology - Evolution
OrthoDB10331
GeneTree (enSembl)ENSG00000179913
Phylogenetic Trees/Animal Genes : TreeFamB3GNT3
Homologs : HomoloGeneB3GNT3
Homology/Alignments : Family Browser (UCSC)B3GNT3
Gene fusions - Rearrangements
Fusion : QuiverB3GNT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT3
dbVarB3GNT3
ClinVarB3GNT3
MonarchB3GNT3
1000_GenomesB3GNT3 
Exome Variant ServerB3GNT3
GNOMAD BrowserENSG00000179913
Varsome BrowserB3GNT3
ACMGB3GNT3 variants
VarityQ9Y2A9
Genomic Variants (DGV)B3GNT3 [DGVbeta]
DECIPHERB3GNT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT3 
Mutations
ICGC Data PortalB3GNT3 
TCGA Data PortalB3GNT3 
Broad Tumor PortalB3GNT3
OASIS PortalB3GNT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DB3GNT3
Mutations and Diseases : HGMDB3GNT3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaB3GNT3
DgiDB (Drug Gene Interaction Database)B3GNT3
DoCM (Curated mutations)B3GNT3
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT3
Cancer3DB3GNT3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605863   
Orphanet
DisGeNETB3GNT3
MedgenB3GNT3
Genetic Testing Registry B3GNT3
NextProtQ9Y2A9 [Medical]
GENETestsB3GNT3
Target ValidationB3GNT3
Huge Navigator B3GNT3 [HugePedia]
ClinGenB3GNT3
Clinical trials, drugs, therapy
MyCancerGenomeB3GNT3
Protein Interactions : CTDB3GNT3
Pharm GKB GenePA25219
PharosQ9Y2A9
Clinical trialB3GNT3
Miscellaneous
canSAR (ICR)B3GNT3
HarmonizomeB3GNT3
DataMed IndexB3GNT3
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXB3GNT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:00:48 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.