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B3GNT4 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4)

Identity

Alias_symbol (synonym)B3GN-T4
beta3Gn-T4
Other alias
HGNC (Hugo) B3GNT4
LocusID (NCBI) 79369
Atlas_Id 60682
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122203681 and ends at 122208952 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT4   15683
Cards
Entrez_Gene (NCBI)B3GNT4  79369  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
AliasesB3GN-T4; beta3Gn-T4
GeneCards (Weizmann)B3GNT4
Ensembl hg19 (Hinxton)ENSG00000176383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176383 [Gene_View]  chr12:122203681-122208952 [Contig_View]  B3GNT4 [Vega]
ICGC DataPortalENSG00000176383
TCGA cBioPortalB3GNT4
AceView (NCBI)B3GNT4
Genatlas (Paris)B3GNT4
WikiGenes79369
SOURCE (Princeton)B3GNT4
Genetics Home Reference (NIH)B3GNT4
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT4  -     chr12:122203681-122208952 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT4  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblB3GNT4 - 12q24.31 [CytoView hg19]  B3GNT4 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIB3GNT4 [Mapview hg19]  B3GNT4 [Mapview hg38]
OMIM605864   
Gene and transcription
Genbank (Entrez)AB049586 AJ130848 AJ278962 AK095746 AL834452
RefSeq transcript (Entrez)NM_001330492 NM_030765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GNT4
Cluster EST : UnigeneHs.363315 [ NCBI ]
CGAP (NCI)Hs.363315
Alternative Splicing GalleryENSG00000176383
Gene ExpressionB3GNT4 [ NCBI-GEO ]   B3GNT4 [ EBI - ARRAY_EXPRESS ]   B3GNT4 [ SEEK ]   B3GNT4 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79369
GTEX Portal (Tissue expression)B3GNT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0J1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0J1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0J1
Splice isoforms : SwissVarQ9C0J1
PhosPhoSitePlusQ9C0J1
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT4
DMDM Disease mutations79369
Blocks (Seattle)B3GNT4
SuperfamilyQ9C0J1
Human Protein AtlasENSG00000176383
Peptide AtlasQ9C0J1
HPRD12058
IPIIPI00479361   IPI00792487   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0J1
IntAct (EBI)Q9C0J1
FunCoupENSG00000176383
BioGRIDB3GNT4
STRING (EMBL)B3GNT4
ZODIACB3GNT4
Ontologies - Pathways
QuickGOQ9C0J1
Ontology : AmiGOGolgi membrane  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  
Ontology : EGO-EBIGolgi membrane  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  poly-N-acetyllactosamine biosynthetic process  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GNT4
Atlas of Cancer Signalling NetworkB3GNT4
Wikipedia pathwaysB3GNT4
Orthology - Evolution
OrthoDB79369
GeneTree (enSembl)ENSG00000176383
Phylogenetic Trees/Animal Genes : TreeFamB3GNT4
HOVERGENQ9C0J1
HOGENOMQ9C0J1
Homologs : HomoloGeneB3GNT4
Homology/Alignments : Family Browser (UCSC)B3GNT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT4
dbVarB3GNT4
ClinVarB3GNT4
1000_GenomesB3GNT4 
Exome Variant ServerB3GNT4
ExAC (Exome Aggregation Consortium)B3GNT4 (select the gene name)
Genetic variants : HAPMAP79369
Genomic Variants (DGV)B3GNT4 [DGVbeta]
DECIPHERB3GNT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT4 
Mutations
ICGC Data PortalB3GNT4 
TCGA Data PortalB3GNT4 
Broad Tumor PortalB3GNT4
OASIS PortalB3GNT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT4
DgiDB (Drug Gene Interaction Database)B3GNT4
DoCM (Curated mutations)B3GNT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT4 (select a term)
intoGenB3GNT4
Cancer3DB3GNT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605864   
Orphanet
MedgenB3GNT4
Genetic Testing Registry B3GNT4
NextProtQ9C0J1 [Medical]
TSGene79369
GENETestsB3GNT4
Target ValidationB3GNT4
Huge Navigator B3GNT4 [HugePedia]
snp3D : Map Gene to Disease79369
BioCentury BCIQB3GNT4
ClinGenB3GNT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79369
Chemical/Pharm GKB GenePA25220
Clinical trialB3GNT4
Miscellaneous
canSAR (ICR)B3GNT4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT4
EVEXB3GNT4
GoPubMedB3GNT4
iHOPB3GNT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:09 CEST 2017

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