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B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5)

Identity

Alias_names3-N-acetyl-beta-D-glucosaminyltransferase
Alias_symbol (synonym)B3GN-T5
beta3Gn-T5
Other alias
HGNC (Hugo) B3GNT5
LocusID (NCBI) 84002
Atlas_Id 52877
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 183253244 and ends at 183273391 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
B3GNT5 (3q27.1) / ALG3 (3q27.1)B3GNT5 (3q27.1) / CAMK2N2 (3q27.1)B3GNT5 3q27.1 / ALG3 3q27.1
B3GNT5 3q27.1 / CAMK2N2 3q27.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT5   15684
Cards
Entrez_Gene (NCBI)B3GNT5  84002  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
AliasesB3GN-T5; beta3Gn-T5
GeneCards (Weizmann)B3GNT5
Ensembl hg19 (Hinxton)ENSG00000176597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176597 [Gene_View]  chr3:183253244-183273391 [Contig_View]  B3GNT5 [Vega]
ICGC DataPortalENSG00000176597
TCGA cBioPortalB3GNT5
AceView (NCBI)B3GNT5
Genatlas (Paris)B3GNT5
WikiGenes84002
SOURCE (Princeton)B3GNT5
Genetics Home Reference (NIH)B3GNT5
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT5  -     chr3:183253244-183273391 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT5  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblB3GNT5 - 3q27.1 [CytoView hg19]  B3GNT5 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIB3GNT5 [Mapview hg19]  B3GNT5 [Mapview hg38]
OMIM615333   
Gene and transcription
Genbank (Entrez)AB045278 AB209517 AF368169 AJ304505 AK074235
RefSeq transcript (Entrez)NM_032047
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GNT5
Cluster EST : UnigeneHs.718506 [ NCBI ]
CGAP (NCI)Hs.718506
Alternative Splicing GalleryENSG00000176597
Gene ExpressionB3GNT5 [ NCBI-GEO ]   B3GNT5 [ EBI - ARRAY_EXPRESS ]   B3GNT5 [ SEEK ]   B3GNT5 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84002
GTEX Portal (Tissue expression)B3GNT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYG0
Splice isoforms : SwissVarQ9BYG0
Catalytic activity : Enzyme2.4.1.206 [ Enzyme-Expasy ]   2.4.1.2062.4.1.206 [ IntEnz-EBI ]   2.4.1.206 [ BRENDA ]   2.4.1.206 [ KEGG ]   
PhosPhoSitePlusQ9BYG0
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT5
DMDM Disease mutations84002
Blocks (Seattle)B3GNT5
SuperfamilyQ9BYG0
Human Protein AtlasENSG00000176597
Peptide AtlasQ9BYG0
HPRD12511
IPIIPI00012508   IPI00946514   IPI00947375   IPI00944952   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYG0
IntAct (EBI)Q9BYG0
FunCoupENSG00000176597
BioGRIDB3GNT5
STRING (EMBL)B3GNT5
ZODIACB3GNT5
Ontologies - Pathways
QuickGOQ9BYG0
Ontology : AmiGOGolgi membrane  intracellular  protein glycosylation  central nervous system development  brain development  beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  glycolipid biosynthetic process  integral component of membrane  O-glycan processing  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity  
Ontology : EGO-EBIGolgi membrane  intracellular  protein glycosylation  central nervous system development  brain development  beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  glycolipid biosynthetic process  integral component of membrane  O-glycan processing  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB3GNT5
Atlas of Cancer Signalling NetworkB3GNT5
Wikipedia pathwaysB3GNT5
Orthology - Evolution
OrthoDB84002
GeneTree (enSembl)ENSG00000176597
Phylogenetic Trees/Animal Genes : TreeFamB3GNT5
HOVERGENQ9BYG0
HOGENOMQ9BYG0
Homologs : HomoloGeneB3GNT5
Homology/Alignments : Family Browser (UCSC)B3GNT5
Gene fusions - Rearrangements
Fusion : MitelmanB3GNT5/ALG3 [3q27.1/3q27.1]  
Fusion : MitelmanB3GNT5/CAMK2N2 [3q27.1/3q27.1]  [t(3;3)(q27;q27)]  
Fusion: TCGAB3GNT5 3q27.1 ALG3 3q27.1 LUSC
Fusion: TCGAB3GNT5 3q27.1 CAMK2N2 3q27.1 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT5
dbVarB3GNT5
ClinVarB3GNT5
1000_GenomesB3GNT5 
Exome Variant ServerB3GNT5
ExAC (Exome Aggregation Consortium)B3GNT5 (select the gene name)
Genetic variants : HAPMAP84002
Genomic Variants (DGV)B3GNT5 [DGVbeta]
DECIPHERB3GNT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT5 
Mutations
ICGC Data PortalB3GNT5 
TCGA Data PortalB3GNT5 
Broad Tumor PortalB3GNT5
OASIS PortalB3GNT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT5
DgiDB (Drug Gene Interaction Database)B3GNT5
DoCM (Curated mutations)B3GNT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT5 (select a term)
intoGenB3GNT5
Cancer3DB3GNT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615333   
Orphanet
MedgenB3GNT5
Genetic Testing Registry B3GNT5
NextProtQ9BYG0 [Medical]
TSGene84002
GENETestsB3GNT5
Huge Navigator B3GNT5 [HugePedia]
snp3D : Map Gene to Disease84002
BioCentury BCIQB3GNT5
ClinGenB3GNT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84002
Chemical/Pharm GKB GenePA25221
Clinical trialB3GNT5
Miscellaneous
canSAR (ICR)B3GNT5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT5
EVEXB3GNT5
GoPubMedB3GNT5
iHOPB3GNT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:07:23 CEST 2017

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