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B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7)

Identity

Alias_symbol (synonym)beta3GnT7
Other alias
HGNC (Hugo) B3GNT7
LocusID (NCBI) 93010
Atlas_Id 55135
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232260335 and ends at 232265875 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT7   18811
Cards
Entrez_Gene (NCBI)B3GNT7  93010  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Aliasesbeta3GnT7
GeneCards (Weizmann)B3GNT7
Ensembl hg19 (Hinxton)ENSG00000156966 [Gene_View]  chr2:232260335-232265875 [Contig_View]  B3GNT7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156966 [Gene_View]  chr2:232260335-232265875 [Contig_View]  B3GNT7 [Vega]
ICGC DataPortalENSG00000156966
TCGA cBioPortalB3GNT7
AceView (NCBI)B3GNT7
Genatlas (Paris)B3GNT7
WikiGenes93010
SOURCE (Princeton)B3GNT7
Genetics Home Reference (NIH)B3GNT7
Genomic and cartography
GoldenPath hg19 (UCSC)B3GNT7  -     chr2:232260335-232265875 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)B3GNT7  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblB3GNT7 - 2q37.1 [CytoView hg19]  B3GNT7 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIB3GNT7 [Mapview hg19]  B3GNT7 [Mapview hg38]
OMIM615313   
Gene and transcription
Genbank (Entrez)AF502430 AK000770 AK126207 BC140377 BC148680
RefSeq transcript (Entrez)NM_145236
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)B3GNT7
Cluster EST : UnigeneHs.299329 [ NCBI ]
CGAP (NCI)Hs.299329
Alternative Splicing GalleryENSG00000156966
Gene ExpressionB3GNT7 [ NCBI-GEO ]   B3GNT7 [ EBI - ARRAY_EXPRESS ]   B3GNT7 [ SEEK ]   B3GNT7 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93010
GTEX Portal (Tissue expression)B3GNT7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFL0
Splice isoforms : SwissVarQ8NFL0
PhosPhoSitePlusQ8NFL0
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT7
DMDM Disease mutations93010
Blocks (Seattle)B3GNT7
SuperfamilyQ8NFL0
Human Protein AtlasENSG00000156966
Peptide AtlasQ8NFL0
HPRD12512
IPIIPI00168848   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFL0
IntAct (EBI)Q8NFL0
FunCoupENSG00000156966
BioGRIDB3GNT7
STRING (EMBL)B3GNT7
ZODIACB3GNT7
Ontologies - Pathways
QuickGOQ8NFL0
Ontology : AmiGOGolgi membrane  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  
Ontology : EGO-EBIGolgi membrane  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  keratan sulfate biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate   
NDEx NetworkB3GNT7
Atlas of Cancer Signalling NetworkB3GNT7
Wikipedia pathwaysB3GNT7
Orthology - Evolution
OrthoDB93010
GeneTree (enSembl)ENSG00000156966
Phylogenetic Trees/Animal Genes : TreeFamB3GNT7
HOVERGENQ8NFL0
HOGENOMQ8NFL0
Homologs : HomoloGeneB3GNT7
Homology/Alignments : Family Browser (UCSC)B3GNT7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT7
dbVarB3GNT7
ClinVarB3GNT7
1000_GenomesB3GNT7 
Exome Variant ServerB3GNT7
ExAC (Exome Aggregation Consortium)B3GNT7 (select the gene name)
Genetic variants : HAPMAP93010
Genomic Variants (DGV)B3GNT7 [DGVbeta]
DECIPHER (Syndromes)2:232260335-232265875  ENSG00000156966
CONAN: Copy Number AnalysisB3GNT7 
Mutations
ICGC Data PortalB3GNT7 
TCGA Data PortalB3GNT7 
Broad Tumor PortalB3GNT7
OASIS PortalB3GNT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT7
DgiDB (Drug Gene Interaction Database)B3GNT7
DoCM (Curated mutations)B3GNT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT7 (select a term)
intoGenB3GNT7
Cancer3DB3GNT7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615313   
Orphanet
MedgenB3GNT7
Genetic Testing Registry B3GNT7
NextProtQ8NFL0 [Medical]
TSGene93010
GENETestsB3GNT7
Huge Navigator B3GNT7 [HugePedia]
snp3D : Map Gene to Disease93010
BioCentury BCIQB3GNT7
ClinGenB3GNT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93010
Chemical/Pharm GKB GenePA38692
Clinical trialB3GNT7
Miscellaneous
canSAR (ICR)B3GNT7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT7
EVEXB3GNT7
GoPubMedB3GNT7
iHOPB3GNT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:38 CEST 2017

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