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B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8)

Identity

Alias_namesB3GALT7
UDP-Gal:betaGal beta 1
Alias_symbol (synonym)BGALT15
beta3Gn-T8
Other alias
HGNC (Hugo) B3GNT8
LocusID (NCBI) 374907
Atlas_Id 43857
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41425359 and ends at 41428730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT8   24139
Cards
Entrez_Gene (NCBI)B3GNT8  374907  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
AliasesB3GALT7; BGALT15; beta3Gn-T8
GeneCards (Weizmann)B3GNT8
Ensembl hg19 (Hinxton)ENSG00000177191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177191 [Gene_View]  ENSG00000177191 [Sequence]  chr19:41425359-41428730 [Contig_View]  B3GNT8 [Vega]
ICGC DataPortalENSG00000177191
TCGA cBioPortalB3GNT8
AceView (NCBI)B3GNT8
Genatlas (Paris)B3GNT8
WikiGenes374907
SOURCE (Princeton)B3GNT8
Genetics Home Reference (NIH)B3GNT8
Genomic and cartography
GoldenPath hg38 (UCSC)B3GNT8  -     chr19:41425359-41428730 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B3GNT8  -     19q13.2   [Description]    (hg19-Feb_2009)
B3GNT8 - 19q13.2 [CytoView hg19]  B3GNT8 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIB3GNT8 [Mapview hg19]  B3GNT8 [Mapview hg38]
OMIM615357   
Gene and transcription
Genbank (Entrez)AB175895 AJ419172 AY277592
RefSeq transcript (Entrez)NM_198540
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B3GNT8
Cluster EST : UnigeneHs.441681 [ NCBI ]
CGAP (NCI)Hs.441681
Alternative Splicing GalleryENSG00000177191
Gene ExpressionB3GNT8 [ NCBI-GEO ]   B3GNT8 [ EBI - ARRAY_EXPRESS ]   B3GNT8 [ SEEK ]   B3GNT8 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374907
GTEX Portal (Tissue expression)B3GNT8
Human Protein AtlasENSG00000177191-B3GNT8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7M8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7M8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7M8
Splice isoforms : SwissVarQ7Z7M8
PhosPhoSitePlusQ7Z7M8
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT8
DMDM Disease mutations374907
Blocks (Seattle)B3GNT8
SuperfamilyQ7Z7M8
Human Protein Atlas [tissue]ENSG00000177191-B3GNT8 [tissue]
Peptide AtlasQ7Z7M8
HPRD12510
IPIIPI00184094   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7M8
IntAct (EBI)Q7Z7M8
FunCoupENSG00000177191
BioGRIDB3GNT8
STRING (EMBL)B3GNT8
ZODIACB3GNT8
Ontologies - Pathways
QuickGOQ7Z7M8
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum  Golgi apparatus  protein glycosylation  acetylgalactosaminyltransferase activity  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  protein N-acetylglucosaminyltransferase activity  O-glycan processing  poly-N-acetyllactosamine biosynthetic process  poly-N-acetyllactosamine biosynthetic process  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum  Golgi apparatus  protein glycosylation  acetylgalactosaminyltransferase activity  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  integral component of membrane  protein N-acetylglucosaminyltransferase activity  O-glycan processing  poly-N-acetyllactosamine biosynthetic process  poly-N-acetyllactosamine biosynthetic process  extracellular exosome  
NDEx NetworkB3GNT8
Atlas of Cancer Signalling NetworkB3GNT8
Wikipedia pathwaysB3GNT8
Orthology - Evolution
OrthoDB374907
GeneTree (enSembl)ENSG00000177191
Phylogenetic Trees/Animal Genes : TreeFamB3GNT8
HOGENOMQ7Z7M8
Homologs : HomoloGeneB3GNT8
Homology/Alignments : Family Browser (UCSC)B3GNT8
Gene fusions - Rearrangements
Fusion : QuiverB3GNT8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT8
dbVarB3GNT8
ClinVarB3GNT8
1000_GenomesB3GNT8 
Exome Variant ServerB3GNT8
ExAC (Exome Aggregation Consortium)ENSG00000177191
GNOMAD BrowserENSG00000177191
Varsome BrowserB3GNT8
Genetic variants : HAPMAP374907
Genomic Variants (DGV)B3GNT8 [DGVbeta]
DECIPHERB3GNT8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB3GNT8 
Mutations
ICGC Data PortalB3GNT8 
TCGA Data PortalB3GNT8 
Broad Tumor PortalB3GNT8
OASIS PortalB3GNT8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT8
DgiDB (Drug Gene Interaction Database)B3GNT8
DoCM (Curated mutations)B3GNT8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT8 (select a term)
intoGenB3GNT8
Cancer3DB3GNT8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615357   
Orphanet
DisGeNETB3GNT8
MedgenB3GNT8
Genetic Testing Registry B3GNT8
NextProtQ7Z7M8 [Medical]
TSGene374907
GENETestsB3GNT8
Target ValidationB3GNT8
Huge Navigator B3GNT8 [HugePedia]
snp3D : Map Gene to Disease374907
BioCentury BCIQB3GNT8
ClinGenB3GNT8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374907
Chemical/Pharm GKB GenePA134910679
Clinical trialB3GNT8
Miscellaneous
canSAR (ICR)B3GNT8 (select the gene name)
DataMed IndexB3GNT8
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT8
EVEXB3GNT8
GoPubMedB3GNT8
iHOPB3GNT8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu May 2 12:40:36 CEST 2019

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