Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9)

Identity

Alias_symbol (synonym)MGC4655
Other alias-
HGNC (Hugo) B3GNT9
LocusID (NCBI) 84752
Atlas_Id 60684
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67182005 and ends at 67184902 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRADD (16q22.1) / B3GNT9 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNT9   28714
Cards
Entrez_Gene (NCBI)B3GNT9  84752  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Aliases
GeneCards (Weizmann)B3GNT9
Ensembl hg19 (Hinxton)ENSG00000237172 [Gene_View]  chr16:67182005-67184902 [Contig_View]  B3GNT9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237172 [Gene_View]  chr16:67182005-67184902 [Contig_View]  B3GNT9 [Vega]
ICGC DataPortalENSG00000237172
TCGA cBioPortalB3GNT9
AceView (NCBI)B3GNT9
Genatlas (Paris)B3GNT9
WikiGenes84752
SOURCE (Princeton)B3GNT9
Genetics Home Reference (NIH)B3GNT9
Genomic and cartography
GoldenPath hg19 (UCSC)B3GNT9  -     chr16:67182005-67184902 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)B3GNT9  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblB3GNT9 - 16q22.1 [CytoView hg19]  B3GNT9 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIB3GNT9 [Mapview hg19]  B3GNT9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF171091 AY358485 BC012191 BC022849 BU617330
RefSeq transcript (Entrez)NM_033309
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)B3GNT9
Cluster EST : UnigeneHs.744158 [ NCBI ]
CGAP (NCI)Hs.744158
Alternative Splicing GalleryENSG00000237172
Gene ExpressionB3GNT9 [ NCBI-GEO ]   B3GNT9 [ EBI - ARRAY_EXPRESS ]   B3GNT9 [ SEEK ]   B3GNT9 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84752
GTEX Portal (Tissue expression)B3GNT9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX72
Splice isoforms : SwissVarQ6UX72
PhosPhoSitePlusQ6UX72
Domains : Interpro (EBI)Glyco_trans_31   
Domain families : Pfam (Sanger)Galactosyl_T (PF01762)   
Domain families : Pfam (NCBI)pfam01762   
Conserved Domain (NCBI)B3GNT9
DMDM Disease mutations84752
Blocks (Seattle)B3GNT9
SuperfamilyQ6UX72
Human Protein AtlasENSG00000237172
Peptide AtlasQ6UX72
HPRD14651
IPIIPI00061520   IPI00385103   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX72
IntAct (EBI)Q6UX72
FunCoupENSG00000237172
BioGRIDB3GNT9
STRING (EMBL)B3GNT9
ZODIACB3GNT9
Ontologies - Pathways
QuickGOQ6UX72
Ontology : AmiGOGolgi membrane  protein glycosylation  galactosyltransferase activity  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  protein glycosylation  galactosyltransferase activity  integral component of membrane  
NDEx NetworkB3GNT9
Atlas of Cancer Signalling NetworkB3GNT9
Wikipedia pathwaysB3GNT9
Orthology - Evolution
OrthoDB84752
GeneTree (enSembl)ENSG00000237172
Phylogenetic Trees/Animal Genes : TreeFamB3GNT9
HOVERGENQ6UX72
HOGENOMQ6UX72
Homologs : HomoloGeneB3GNT9
Homology/Alignments : Family Browser (UCSC)B3GNT9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNT9
dbVarB3GNT9
ClinVarB3GNT9
1000_GenomesB3GNT9 
Exome Variant ServerB3GNT9
ExAC (Exome Aggregation Consortium)B3GNT9 (select the gene name)
Genetic variants : HAPMAP84752
Genomic Variants (DGV)B3GNT9 [DGVbeta]
DECIPHER (Syndromes)16:67182005-67184902  ENSG00000237172
CONAN: Copy Number AnalysisB3GNT9 
Mutations
ICGC Data PortalB3GNT9 
TCGA Data PortalB3GNT9 
Broad Tumor PortalB3GNT9
OASIS PortalB3GNT9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNT9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNT9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNT9
DgiDB (Drug Gene Interaction Database)B3GNT9
DoCM (Curated mutations)B3GNT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNT9 (select a term)
intoGenB3GNT9
Cancer3DB3GNT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenB3GNT9
Genetic Testing Registry B3GNT9
NextProtQ6UX72 [Medical]
TSGene84752
GENETestsB3GNT9
Huge Navigator B3GNT9 [HugePedia]
snp3D : Map Gene to Disease84752
BioCentury BCIQB3GNT9
ClinGenB3GNT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84752
Chemical/Pharm GKB GenePA164716431
Clinical trialB3GNT9
Miscellaneous
canSAR (ICR)B3GNT9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNT9
EVEXB3GNT9
GoPubMedB3GNT9
iHOPB3GNT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:55:35 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.